Analysis of interatomic Contacts of Structural Units in PDB entry:
7O13


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7O13 entry

There are 5 chains in PDB entry 7O13 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 28THR 429
B
 MET 1GLY 299
C
 ASN 2GLY 299
D
 ASN 2ARG 274
E
 ASN 2ARG 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 58 helices in PDB entry 7O13. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 34Right-handed 310
Helix 2
AA2
A
344 348Right-handed 310
Helix 3
AA3
A
375 383Right-handed alpha
Helix 4
AA4
A
384 388Right-handed 310
Helix 5
AA5
A
392 405Right-handed alpha
Helix 6
AA6
B
44 50Right-handed alpha
Helix 7
AA7
B
69 74Right-handed alpha
Helix 8
AA8
B
90 102Right-handed alpha
Helix 9
AA9
B
105 107Right-handed 310
Helix 10
AB1
B
108 116Right-handed alpha
Helix 11
AB2
B
130 143Right-handed alpha
Helix 12
AB3
B
160 178Right-handed alpha
Helix 13
AB4
B
187 192Right-handed alpha
Helix 14
AB5
B
211 219Right-handed alpha
Helix 15
AB6
B
232 237Right-handed alpha
Helix 16
AB7
B
238 244Right-handed alpha
Helix 17
AB8
B
263 275Right-handed alpha
Helix 18
AB9
B
286 298Right-handed alpha
Helix 19
AC1
C
41 50Right-handed alpha
Helix 20
AC2
C
69 74Right-handed alpha
Helix 21
AC3
C
90 102Right-handed alpha
Helix 22
AC4
C
105 109Right-handed 310
Helix 23
AC5
C
125 129Right-handed 310
Helix 24
AC6
C
130 141Right-handed alpha
Helix 25
AC7
C
160 178Right-handed alpha
Helix 26
AC8
C
190 194Right-handed 310
Helix 27
AC9
C
212 218Right-handed alpha
Helix 28
AD1
C
240 244Right-handed 310
Helix 29
AD2
C
263 274Right-handed alpha
Helix 30
AD3
C
286 299Right-handed alpha
Helix 31
AD4
D
3 15Right-handed alpha
Helix 32
AD5
D
18 42Right-handed alpha
Helix 33
AD6
D
51 75Right-handed alpha
Helix 34
AD7
D
78 83Right-handed alpha
Helix 35
AD8
D
85 91Right-handed alpha
Helix 36
AD9
D
98 129Right-handed alpha
Helix 37
AE1
D
135 167Right-handed alpha
Helix 38
AE2
D
170 188Right-handed alpha
Helix 39
AE3
D
188 200Right-handed alpha
Helix 40
AE4
D
208 215Right-handed 310
Helix 41
AE5
D
216 226Right-handed alpha
Helix 42
AE6
D
236 244Right-handed 310
Helix 43
AE7
D
248 272Right-handed alpha
Helix 44
AE8
E
3 7Right-handed alpha
Helix 45
AE9
E
7 16Right-handed alpha
Helix 46
AF1
E
18 41Right-handed alpha
Helix 47
AF2
E
52 75Right-handed alpha
Helix 48
AF3
E
78 85Right-handed alpha
Helix 49
AF4
E
85 91Right-handed alpha
Helix 50
AF5
E
96 120Right-handed alpha
Helix 51
AF6
E
124 129Right-handed alpha
Helix 52
AF7
E
135 143Right-handed alpha
Helix 53
AF8
E
143 168Right-handed alpha
Helix 54
AF9
E
170 188Right-handed alpha
Helix 55
AG1
E
190 199Right-handed alpha
Helix 56
AG2
E
208 213Right-handed alpha
Helix 57
AG3
E
216 224Right-handed alpha
Helix 58
AG4
E
248 272Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 7O13. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
44 47anti-parallel
Strand 3
A
63 66parallel
Back to list of sheets
Back to top of page

There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
81 83parallel
Strand 3
A
107 111parallel
Strand 4
A
130 135parallel
Strand 5
A
162 165parallel
Strand 6
A
184 187parallel
Strand 7
A
204 209parallel
Strand 8
A
226 231parallel
Strand 9
A
251 254parallel
Strand 10
A
288 291parallel
Strand 11
A
308 312parallel
Strand 12
A
331 335parallel
Back to list of sheets
Back to top of page

There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 73first strand
Strand 2
A
94 96parallel
Strand 3
A
124 126parallel
Strand 4
A
146 148parallel
Strand 5
A
176 178parallel
Strand 6
A
198 200parallel
Strand 7
A
220 222parallel
Strand 8
A
242 244parallel
Strand 9
A
265 267parallel
Strand 10
A
302 304parallel
Strand 11
A
325 327parallel
Strand 12
A
351 352parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
119 121parallel
Strand 3
A
141 143parallel
Strand 4
A
171 173parallel
Strand 5
A
193 195parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 217first strand
Strand 2
A
237 239parallel
Strand 3
A
259 262parallel
Strand 4
A
296 299parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 26first strand
Strand 2
B
4 12anti-parallel
Strand 3
B
59 62anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
149 153parallel
Strand 3
B
180 184parallel
Strand 4
B
32 33parallel
Strand 5
B
197 198parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 248first strand
Strand 2
B
255 259anti-parallel
Strand 3
B
223 227anti-parallel
Strand 4
B
280 283anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 25first strand
Strand 2
C
4 9anti-parallel
Strand 3
C
59 62anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 79first strand
Strand 2
C
149 153parallel
Strand 3
C
180 184parallel
Strand 4
C
31 34parallel
Strand 5
C
197 202parallel
Strand 6
C
205 211anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
224 226first strand
Strand 2
C
255 258anti-parallel
Strand 3
C
246 249anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il