Analysis of interatomic Contacts of Structural Units in PDB entry:
7O1J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7O1J entry

There are 3 chains in PDB entry 7O1J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 SER 2LEU 388
D
 ILE 390VAL 403
A
 SER -12LEU 719
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 7O1J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
27 43Right-handed alpha
Helix 2
AA2
D
47 49Right-handed 310
Helix 3
AA3
D
62 66Right-handed 310
Helix 4
AA4
D
68 77Right-handed alpha
Helix 5
AA5
D
90 92Right-handed 310
Helix 6
AA6
D
93 108Right-handed alpha
Helix 7
AA7
D
132 137Right-handed alpha
Helix 8
AA8
D
137 145Right-handed alpha
Helix 9
AA9
D
148 161Right-handed alpha
Helix 10
AB1
D
163 184Right-handed alpha
Helix 11
AB2
D
214 220Right-handed alpha
Helix 12
AB3
D
225 233Right-handed alpha
Helix 13
AB4
D
233 242Right-handed alpha
Helix 14
AB5
D
271 278Right-handed alpha
Helix 15
AB6
D
302 314Right-handed alpha
Helix 16
AB7
D
317 321Right-handed 310
Helix 17
AB8
D
330 342Right-handed alpha
Helix 18
AB9
D
344 348Right-handed 310
Helix 19
AC1
D
353 358Right-handed alpha
Helix 20
AC2
D
363 380Right-handed alpha
Helix 21
AC3
A
31 48Right-handed alpha
Helix 22
AC4
A
49 52Right-handed 310
Helix 23
AC5
A
69 74Right-handed alpha
Helix 24
AC6
A
75 76Right-handed 310
Helix 25
AC7
A
77 79Right-handed 310
Helix 26
AC8
A
80 100Right-handed alpha
Helix 27
AC9
A
115 124Right-handed alpha
Helix 28
AD1
A
140 145Right-handed 310
Helix 29
AD2
A
151 161Right-handed alpha
Helix 30
AD3
A
161 169Right-handed alpha
Helix 31
AD4
A
177 185Right-handed alpha
Helix 32
AD5
A
193 195Right-handed 310
Helix 33
AD6
A
196 212Right-handed alpha
Helix 34
AD7
A
219 223Right-handed 310
Helix 35
AD8
A
235 242Right-handed alpha
Helix 36
AD9
A
243 254Right-handed alpha
Helix 37
AE1
A
258 273Right-handed alpha
Helix 38
AE2
A
275 292Right-handed alpha
Helix 39
AE3
A
293 304Right-handed alpha
Helix 40
AE4
A
304 312Right-handed alpha
Helix 41
AE5
A
334 347Right-handed alpha
Helix 42
AE6
A
357 378Right-handed alpha
Helix 43
AE7
A
384 393Right-handed alpha
Helix 44
AE8
A
398 402Right-handed 310
Helix 45
AE9
A
415 428Right-handed alpha
Helix 46
AF1
A
444 450Right-handed alpha
Helix 47
AF2
A
454 456Right-handed 310
Helix 48
AF3
A
482 496Right-handed alpha
Helix 49
AF4
A
510 529Right-handed alpha
Helix 50
AF5
A
531 542Right-handed alpha
Helix 51
AF6
A
547 555Right-handed alpha
Helix 52
AF7
A
556 572Right-handed alpha
Helix 53
AF8
A
582 593Right-handed alpha
Helix 54
AF9
A
618 624Right-handed alpha
Helix 55
AG1
A
631 653Right-handed alpha
Helix 56
AG2
A
658 671Right-handed alpha
Helix 57
AG3
A
673 677Right-handed 310
Helix 58
AG4
A
680 685Right-handed alpha
Helix 59
AG5
A
693 709Right-handed alpha
Helix 60
AG6
A
710 713Right-handed 310
Helix 61
AG7
A
715 719Right-handed 310
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There are 8 sheets in PDB entry 7O1J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
16 17first strand
Strand 2
D
261 270anti-parallel
Strand 3
D
113 121anti-parallel
Strand 4
D
51 57parallel
Strand 5
D
86 88parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
16 17first strand
Strand 2
D
261 270anti-parallel
Strand 3
D
6 12anti-parallel
Strand 4
D
284 293anti-parallel
Strand 5
D
394 402anti-parallel
Strand 6
D
383 390anti-parallel
Strand 7
D
323 326parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
194 195first strand
Strand 2
D
201 203anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
15 20anti-parallel
Strand 3
A
54 59parallel
Strand 4
A
105 109parallel
Strand 5
A
126 130parallel
Strand 6
A
189 191parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
113 114parallel
Strand 3
A
137 138parallel
Strand 4
A
175 176anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 354first strand
Strand 2
A
328 331parallel
Strand 3
A
407 410parallel
Strand 4
A
435 438parallel
Strand 5
A
458 462parallel
Strand 6
A
472 477anti-parallel
Strand 7
A
499 504parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
605 608first strand
Strand 2
A
611 615anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
687 688first strand
Strand 2
A
691 692anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il