Analysis of interatomic Contacts of Structural Units in PDB entry:
7O2F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7O2F entry

There are 2 chains in PDB entry 7O2F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 368LYS 576
B
ASN 117GLU 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 7O2F. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
382 387Right-handed 310
Helix 2
AA2
A
410 417Right-handed alpha
Helix 3
AA3
A
418 423Right-handed 310
Helix 4
AA4
A
435 447Right-handed alpha
Helix 5
AA5
A
515 525Right-handed alpha
Helix 6
AA6
A
536 540Right-handed 310
Helix 7
AA7
A
558 569Right-handed alpha
Helix 8
AA8
B
118 127Right-handed alpha
Helix 9
AA9
B
129 134Right-handed 310
Helix 10
AB1
B
154 164Right-handed alpha
Helix 11
AB2
B
173 177Right-handed 310
Helix 12
AB3
B
178 182Right-handed 310
Helix 13
AB4
B
195 199Right-handed 310
Helix 14
AB5
B
212 218Right-handed alpha
Helix 15
AB6
B
219 223Right-handed 310
Helix 16
AB7
B
239 251Right-handed alpha
Helix 17
AB8
B
328 337Right-handed alpha
Helix 18
AB9
B
349 353Right-handed 310
Helix 19
AC1
B
370 377Right-handed alpha
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There are 2 sheets in PDB entry 7O2F. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
502 506first strand
Strand 2
A
450 460parallel
Strand 3
A
480 488anti-parallel
Strand 4
A
426 432anti-parallel
Strand 5
A
391 394parallel
Strand 6
A
530 533parallel
Strand 7
A
544 548parallel
Strand 8
A
372 375parallel
Strand 9
A
554 555anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
168 171first strand
Strand 2
B
358 361parallel
Strand 3
B
343 346parallel
Strand 4
B
186 191parallel
Strand 5
B
225 236parallel
Strand 6
B
285 293anti-parallel
Strand 7
B
254 264anti-parallel
Strand 8
B
313 317parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il