Analysis of interatomic Contacts of Structural Units in PDB entry:
7O78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7O78 entry

There are 2 chains in PDB entry 7O78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 16ASN 506
B
 GLY 15ASN 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7O78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 31Right-handed alpha
Helix 2
AA2
A
101 105Right-handed 310
Helix 3
AA3
A
352 364Right-handed alpha
Helix 4
AA4
A
384 388Right-handed 310
Helix 5
AA5
A
411 415Right-handed 310
Helix 6
AA6
A
427 429Right-handed 310
Helix 7
AA7
A
451 459Right-handed alpha
Helix 8
AA8
A
466 471Right-handed alpha
Helix 9
AA9
A
481 486Right-handed alpha
Helix 10
AB1
A
489 505Right-handed alpha
Helix 11
AB2
B
22 31Right-handed alpha
Helix 12
AB3
B
101 105Right-handed 310
Helix 13
AB4
B
352 363Right-handed alpha
Helix 14
AB5
B
384 388Right-handed 310
Helix 15
AB6
B
411 415Right-handed 310
Helix 16
AB7
B
427 429Right-handed 310
Helix 17
AB8
B
451 459Right-handed alpha
Helix 18
AB9
B
466 471Right-handed alpha
Helix 19
AC1
B
481 486Right-handed alpha
Helix 20
AC2
B
489 505Right-handed alpha
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There are 8 sheets in PDB entry 7O78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 20first strand
Strand 2
A
38 41parallel
Strand 3
A
63 67parallel
Strand 4
A
88 91parallel
Strand 5
A
121 123parallel
Strand 6
A
153 155parallel
Strand 7
A
191 193parallel
Strand 8
A
223 225parallel
Strand 9
A
247 249parallel
Strand 10
A
269 271parallel
Strand 11
A
295 297parallel
Strand 12
A
333 335parallel
Strand 13
A
374 376parallel
Strand 14
A
399 400parallel
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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 47first strand
Strand 2
A
73 77parallel
Strand 3
A
94 98parallel
Strand 4
A
126 128parallel
Strand 5
A
158 160parallel
Strand 6
A
196 199parallel
Strand 7
A
228 232parallel
Strand 8
A
252 254parallel
Strand 9
A
274 276parallel
Strand 10
A
300 301parallel
Strand 11
A
338 340parallel
Strand 12
A
379 381parallel
Strand 13
A
404 406parallel
Strand 14
A
416 417parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
80 83parallel
Strand 3
A
113 115parallel
Strand 4
A
138 140parallel
Strand 5
A
169 171parallel
Strand 6
A
210 212parallel
Strand 7
A
237 242parallel
Strand 8
A
259 264parallel
Strand 9
A
287 289parallel
Strand 10
A
313 317parallel
Strand 11
A
345 348parallel
Strand 12
A
391 392parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 420first strand
Strand 2
A
431 432anti-parallel
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There are 14 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 20first strand
Strand 2
B
38 41parallel
Strand 3
B
63 67parallel
Strand 4
B
88 91parallel
Strand 5
B
121 123parallel
Strand 6
B
153 155parallel
Strand 7
B
191 193parallel
Strand 8
B
223 225parallel
Strand 9
B
247 249parallel
Strand 10
B
269 271parallel
Strand 11
B
295 297parallel
Strand 12
B
333 335parallel
Strand 13
B
374 376parallel
Strand 14
B
399 400parallel
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There are 14 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 47first strand
Strand 2
B
73 77parallel
Strand 3
B
94 98parallel
Strand 4
B
126 128parallel
Strand 5
B
158 160parallel
Strand 6
B
196 199parallel
Strand 7
B
228 232parallel
Strand 8
B
252 254parallel
Strand 9
B
274 276parallel
Strand 10
B
300 301parallel
Strand 11
B
338 340parallel
Strand 12
B
379 381parallel
Strand 13
B
404 406parallel
Strand 14
B
416 417parallel
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There are 12 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
80 83parallel
Strand 3
B
113 115parallel
Strand 4
B
138 140parallel
Strand 5
B
169 171parallel
Strand 6
B
210 212parallel
Strand 7
B
237 242parallel
Strand 8
B
259 264parallel
Strand 9
B
287 289parallel
Strand 10
B
313 317parallel
Strand 11
B
345 348parallel
Strand 12
B
391 392parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
419 420first strand
Strand 2
B
431 432anti-parallel
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