Analysis of interatomic Contacts of Structural Units in PDB entry:
7O7F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7O7F entry

There are 7 chains in PDB entry 7O7F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	PHE 354
B	GLU 3	ASN 340
C	THR 16	HIS 315
G	LEU 9	GLU 66
I	GLY 1	GLU 66
H	ASP 20	SER 240
F	ASP 21	ASN 237

There are 34 helices in PDB entry 7O7F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	31	Right-handed alpha
Helix 2	AA2	A	45	54	Right-handed alpha
Helix 3	AA3	A	207	211	Right-handed 310
Helix 4	AA4	A	212	216	Right-handed 310
Helix 5	AA5	A	241	255	Right-handed alpha
Helix 6	AA6	A	270	281	Right-handed alpha
Helix 7	AA7	A	282	286	Right-handed 310
Helix 8	AA8	A	295	309	Right-handed alpha
Helix 9	AA9	A	329	352	Right-handed alpha
Helix 10	AB1	B	4	26	Right-handed alpha
Helix 11	AB2	B	29	34	Right-handed alpha
Helix 12	AB3	C	25	58	Right-handed alpha
Helix 13	AB4	C	63	91	Right-handed alpha
Helix 14	AB5	C	97	132	Right-handed alpha
Helix 15	AB6	C	132	140	Right-handed alpha
Helix 16	AB7	C	141	165	Right-handed alpha
Helix 17	AB8	C	183	201	Right-handed alpha
Helix 18	AB9	C	203	224	Right-handed alpha
Helix 19	AC1	C	228	260	Right-handed alpha
Helix 20	AC2	C	261	265	Right-handed 310
Helix 21	AC3	C	268	299	Right-handed alpha
Helix 22	AC4	C	302	314	Right-handed alpha
Helix 23	AC5	G	10	27	Right-handed alpha
Helix 24	AC6	G	32	49	Right-handed alpha
Helix 25	AC7	G	58	62	Right-handed 310
Helix 26	AC8	I	20	22	Right-handed 310
Helix 27	AC9	I	55	66	Right-handed alpha
Helix 28	AD1	H	47	51	Right-handed 310
Helix 29	AD2	H	72	75	Right-handed 310
Helix 30	AD3	H	106	110	Right-handed 310
Helix 31	AD4	H	183	185	Right-handed 310
Helix 32	AD5	F	104	108	Right-handed 310
Helix 33	AD6	F	146	152	Right-handed alpha
Helix 34	AD7	F	208	213	Right-handed alpha

There are 20 sheets in PDB entry 7O7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	33	39	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	322	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	217	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	171	first strand
Strand 2	C	176	177	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	24	29	first strand
Strand 2	I	39	43	anti-parallel
Strand 3	I	48	49	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	22	26	first strand
Strand 2	H	36	44	anti-parallel
Strand 3	H	97	103	anti-parallel
Strand 4	H	87	92	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	31	first strand
Strand 2	H	134	138	parallel
Strand 3	H	111	118	anti-parallel
Strand 4	H	52	58	anti-parallel
Strand 5	H	64	70	anti-parallel
Strand 6	H	77	79	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	31	first strand
Strand 2	H	134	138	parallel
Strand 3	H	111	118	anti-parallel
Strand 4	H	129	130	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	147	151	first strand
Strand 2	H	162	172	anti-parallel
Strand 3	H	201	211	anti-parallel
Strand 4	H	190	192	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	147	151	first strand
Strand 2	H	162	172	anti-parallel
Strand 3	H	201	211	anti-parallel
Strand 4	H	196	198	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	178	181	first strand
Strand 2	H	221	226	anti-parallel
Strand 3	H	231	236	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	24	25	first strand
Strand 2	F	39	45	anti-parallel
Strand 3	F	95	100	anti-parallel
Strand 4	F	87	92	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	78	79	first strand
Strand 2	F	70	74	anti-parallel
Strand 3	F	58	63	anti-parallel
Strand 4	F	109	115	anti-parallel
Strand 5	F	127	129	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	139	143	first strand
Strand 2	F	154	164	anti-parallel
Strand 3	F	198	207	anti-parallel
Strand 4	F	184	188	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	180	first strand
Strand 2	F	170	175	anti-parallel
Strand 3	F	216	222	anti-parallel
Strand 4	F	230	235	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7O7F

Analysis of interatomic Contacts of Structural Units in PDB entry:
7O7F