Analysis of interatomic Contacts of Structural Units in PDB entry:
7O7J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7O7J entry

There are 2 chains in PDB entry 7O7J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 184THR 358
A
 LEU 360SER 551
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 7O7J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
231 233Right-handed 310
Helix 2
AA2
A
234 250Right-handed alpha
Helix 3
AA3
A
282 289Right-handed alpha
Helix 4
AA4
A
295 317Right-handed alpha
Helix 5
AA5
A
324 326Right-handed 310
Helix 6
AA6
A
362 366Right-handed 310
Helix 7
AA7
A
367 373Right-handed alpha
Helix 8
AA8
A
378 395Right-handed alpha
Helix 9
AA9
A
403 416Right-handed alpha
Helix 10
AB1
A
419 426Right-handed alpha
Helix 11
AB2
A
428 432Right-handed alpha
Helix 12
AB3
A
448 457Right-handed alpha
Helix 13
AB4
A
471 477Right-handed 310
Helix 14
AB5
A
485 506Right-handed alpha
Helix 15
AB6
A
515 520Right-handed alpha
Helix 16
AB7
A
522 527Right-handed alpha
Helix 17
AB8
A
527 532Right-handed alpha
Helix 18
AB9
A
538 551Right-handed alpha
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There are 4 sheets in PDB entry 7O7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 206first strand
Strand 2
A
209 216anti-parallel
Strand 3
A
222 228anti-parallel
Strand 4
A
270 276anti-parallel
Strand 5
A
261 267anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 281first strand
Strand 2
A
328 332anti-parallel
Strand 3
A
336 342anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 319first strand
Strand 2
A
349 350anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 434first strand
Strand 2
A
445 446anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il