Analysis of interatomic Contacts of Structural Units in PDB entry:
7O9P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7O9P entry

There is 1 chain in PDB entry 7O9P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 21PRO 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 7O9P. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
307 309Right-handed 310
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There are 4 sheets in PDB entry 7O9P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 32first strand
Strand 2
A
43 54parallel
Strand 3
A
64 68parallel
Strand 4
A
102 108parallel
Strand 5
A
132 138parallel
Strand 6
A
161 167parallel
Strand 7
A
196 200parallel
Strand 8
A
215 220parallel
Strand 9
A
234 239parallel
Strand 10
A
255 258parallel
Strand 11
A
297 301parallel
Strand 12
A
287 292anti-parallel
Strand 13
A
276 281anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 32first strand
Strand 2
A
43 54parallel
Strand 3
A
88 92parallel
Strand 4
A
119 123parallel
Strand 5
A
148 151parallel
Strand 6
A
180 184parallel
Strand 7
A
203 207parallel
Strand 8
A
223 226parallel
Strand 9
A
243 246parallel
Strand 10
A
269 273parallel
Strand 11
A
327 332anti-parallel
Strand 12
A
311 316anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
58 60parallel
Strand 3
A
96 99parallel
Strand 4
A
126 129parallel
Strand 5
A
155 158parallel
Strand 6
A
190 193parallel
Strand 7
A
210 213parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
266 267anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il