Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 7O9V entry
There are 3 chains in PDB entry 7O9V
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
A
|
MET 216 | ILE 296 |
B
|
GLY 215 | ARG 298 |
C
|
MET 216 | ILE 296 |
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There are 15
helices in PDB entry 7O9V. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
| Helix 1 |
AA1 | A
| 216 |
245 | Right-handed alpha |
| Helix 2 |
AA2 | A
| 249 |
253 | Right-handed 310 |
| Helix 3 |
AA3 | A
| 255 |
259 | Right-handed 310 |
| Helix 4 |
AA4 | A
| 261 |
265 | Right-handed 310 |
| Helix 5 |
AA5 | A
| 267 |
296 | Right-handed alpha |
| Helix 6 |
AA6 | B
| 216 |
245 | Right-handed alpha |
| Helix 7 |
AA7 | B
| 249 |
253 | Right-handed 310 |
| Helix 8 |
AA8 | B
| 255 |
259 | Right-handed 310 |
| Helix 9 |
AA9 | B
| 261 |
265 | Right-handed 310 |
| Helix 10 |
AB1 | B
| 267 |
298 | Right-handed alpha |
| Helix 11 |
AB2 | C
| 217 |
245 | Right-handed alpha |
| Helix 12 |
AB3 | C
| 249 |
253 | Right-handed 310 |
| Helix 13 |
AB4 | C
| 255 |
259 | Right-handed 310 |
| Helix 14 |
AB5 | C
| 261 |
265 | Right-handed 310 |
| Helix 15 |
AB6 | C
| 267 |
296 | Right-handed alpha |
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There are no sheets in PDB entry
7O9V
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il