Analysis of interatomic Contacts of Structural Units in PDB entry:
7OAM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OAM entry

There are 2 chains in PDB entry 7OAM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 575ASP 862
B
 LYS 576PRO 862
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 7OAM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
583 585Right-handed 310
Helix 2
AA2
A
627 641Right-handed alpha
Helix 3
AA3
A
677 686Right-handed alpha
Helix 4
AA4
A
695 716Right-handed alpha
Helix 5
AA5
A
724 726Right-handed 310
Helix 6
AA6
A
762 766Right-handed 310
Helix 7
AA7
A
767 773Right-handed alpha
Helix 8
AA8
A
777 794Right-handed alpha
Helix 9
AA9
A
804 806Right-handed 310
Helix 10
AB1
A
807 814Right-handed alpha
Helix 11
AB2
A
825 834Right-handed alpha
Helix 12
AB3
A
835 837Right-handed 310
Helix 13
AB4
A
839 843Right-handed 310
Helix 14
AB5
A
845 860Right-handed alpha
Helix 15
AB6
B
577 581Right-handed 310
Helix 16
AB7
B
583 585Right-handed 310
Helix 17
AB8
B
678 687Right-handed alpha
Helix 18
AB9
B
696 717Right-handed alpha
Helix 19
AC1
B
725 727Right-handed 310
Helix 20
AC2
B
763 767Right-handed 310
Helix 21
AC3
B
768 774Right-handed alpha
Helix 22
AC4
B
778 795Right-handed alpha
Helix 23
AC5
B
805 807Right-handed 310
Helix 24
AC6
B
808 815Right-handed alpha
Helix 25
AC7
B
826 835Right-handed alpha
Helix 26
AC8
B
836 838Right-handed 310
Helix 27
AC9
B
840 844Right-handed 310
Helix 28
AD1
B
846 861Right-handed alpha
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There are 4 sheets in PDB entry 7OAM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
587 594first strand
Strand 2
A
601 607anti-parallel
Strand 3
A
613 620anti-parallel
Strand 4
A
666 671anti-parallel
Strand 5
A
653 656anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
728 730first strand
Strand 2
A
736 738anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
587 594first strand
Strand 2
B
601 607anti-parallel
Strand 3
B
613 619anti-parallel
Strand 4
B
665 672anti-parallel
Strand 5
B
654 659anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
729 731first strand
Strand 2
B
737 739anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il