Analysis of interatomic Contacts of Structural Units in PDB entry:
7OAR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OAR entry

There are 3 chains in PDB entry 7OAR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 66LEU 507
B
 GLU 66SER 501
C
 T 1 T 28
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 7OAR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 81Right-handed alpha
Helix 2
AA2
A
96 109Right-handed alpha
Helix 3
AA3
A
118 125Right-handed alpha
Helix 4
AA4
A
130 135Right-handed alpha
Helix 5
AA5
A
156 165Right-handed alpha
Helix 6
AA6
A
172 176Right-handed 310
Helix 7
AA7
A
177 192Right-handed alpha
Helix 8
AA8
A
197 202Right-handed 310
Helix 9
AA9
A
220 231Right-handed alpha
Helix 10
AB1
A
234 243Right-handed 310
Helix 11
AB2
A
260 272Right-handed alpha
Helix 12
AB3
A
274 286Right-handed alpha
Helix 13
AB4
A
287 293Right-handed 310
Helix 14
AB5
A
302 315Right-handed alpha
Helix 15
AB6
A
333 337Right-handed 310
Helix 16
AB7
A
431 435Right-handed alpha
Helix 17
AB8
A
454 461Right-handed alpha
Helix 18
AB9
A
465 467Right-handed 310
Helix 19
AC1
A
476 480Right-handed 310
Helix 20
AC2
A
483 493Right-handed alpha
Helix 21
AC3
B
69 81Right-handed alpha
Helix 22
AC4
B
96 108Right-handed alpha
Helix 23
AC5
B
118 125Right-handed alpha
Helix 24
AC6
B
130 135Right-handed alpha
Helix 25
AC7
B
156 165Right-handed alpha
Helix 26
AC8
B
172 176Right-handed 310
Helix 27
AC9
B
177 193Right-handed alpha
Helix 28
AD1
B
197 202Right-handed 310
Helix 29
AD2
B
221 230Right-handed alpha
Helix 30
AD3
B
234 243Right-handed 310
Helix 31
AD4
B
260 272Right-handed alpha
Helix 32
AD5
B
274 286Right-handed alpha
Helix 33
AD6
B
287 293Right-handed 310
Helix 34
AD7
B
302 316Right-handed alpha
Helix 35
AD8
B
431 435Right-handed alpha
Helix 36
AD9
B
454 461Right-handed alpha
Helix 37
AE1
B
465 467Right-handed 310
Helix 38
AE2
B
476 480Right-handed 310
Helix 39
AE3
B
483 493Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 7OAR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
112 116parallel
Strand 3
A
167 170parallel
Strand 4
A
203 208parallel
Strand 5
A
86 90parallel
Strand 6
A
246 250parallel
Strand 7
A
497 498anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 430first strand
Strand 2
A
297 300parallel
Strand 3
A
442 444parallel
Strand 4
A
469 471parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 325first strand
Strand 2
A
342 345anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 330first strand
Strand 2
A
409 420anti-parallel
Strand 3
A
394 404anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 391first strand
Strand 2
A
378 382anti-parallel
Strand 3
A
367 373anti-parallel
Strand 4
A
350 353anti-parallel
Strand 5
A
423 425anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 129first strand
Strand 2
B
113 116parallel
Strand 3
B
167 170parallel
Strand 4
B
203 208parallel
Strand 5
B
86 90parallel
Strand 6
B
246 250parallel
Strand 7
B
497 498anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
428 430first strand
Strand 2
B
297 300parallel
Strand 3
B
442 444parallel
Strand 4
B
469 471parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 325first strand
Strand 2
B
342 345anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 391first strand
Strand 2
B
377 382anti-parallel
Strand 3
B
367 374anti-parallel
Strand 4
B
351 353anti-parallel
Strand 5
B
423 425anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il