Analysis of interatomic Contacts of Structural Units in PDB entry:
7OB7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OB7 entry

There is 1 chain in PDB entry 7OB7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7OB7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 11Right-handed alpha
Helix 2
AA2
A
12 22Right-handed alpha
Helix 3
AA3
A
24 34Right-handed alpha
Helix 4
AA4
A
49 57Right-handed alpha
Helix 5
AA5
A
60 75Right-handed alpha
Helix 6
AA6
A
124 131Right-handed alpha
Helix 7
AA7
A
132 136Right-handed 310
Helix 8
AA8
A
160 162Right-handed 310
Helix 9
AA9
A
163 167Right-handed 310
Helix 10
AB1
A
174 184Right-handed alpha
Helix 11
AB2
A
191 198Right-handed alpha
Helix 12
AB3
A
202 211Right-handed alpha
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There are 3 sheets in PDB entry 7OB7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 37first strand
Strand 2
A
58 59parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 122first strand
Strand 2
A
103 107anti-parallel
Strand 3
A
93 100anti-parallel
Strand 4
A
80 86anti-parallel
Strand 5
A
157 158anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 122first strand
Strand 2
A
103 107anti-parallel
Strand 3
A
93 100anti-parallel
Strand 4
A
80 86anti-parallel
Strand 5
A
150 154anti-parallel
Strand 6
A
186 188anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il