Analysis of interatomic Contacts of Structural Units in PDB entry:
7OBE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OBE entry

There are 2 chains in PDB entry 7OBE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5ASN 484
B
 ASP 9PHE 483
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 7OBE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 26Right-handed alpha
Helix 2
AA2
A
28 43Right-handed alpha
Helix 3
AA3
A
46 60Right-handed alpha
Helix 4
AA4
A
62 77Right-handed alpha
Helix 5
AA5
A
80 94Right-handed alpha
Helix 6
AA6
A
96 111Right-handed alpha
Helix 7
AA7
A
114 137Right-handed alpha
Helix 8
AA8
A
140 144Right-handed 310
Helix 9
AA9
A
146 151Right-handed 310
Helix 10
AB1
A
152 156Right-handed 310
Helix 11
AB2
A
173 186Right-handed alpha
Helix 12
AB3
A
191 208Right-handed alpha
Helix 13
AB4
A
232 244Right-handed alpha
Helix 14
AB5
A
264 279Right-handed alpha
Helix 15
AB6
A
292 300Right-handed alpha
Helix 16
AB7
A
300 309Right-handed alpha
Helix 17
AB8
A
311 323Right-handed alpha
Helix 18
AB9
A
348 354Right-handed alpha
Helix 19
AC1
A
365 373Right-handed alpha
Helix 20
AC2
A
393 404Right-handed alpha
Helix 21
AC3
A
436 440Right-handed 310
Helix 22
AC4
A
477 482Right-handed alpha
Helix 23
AC5
B
10 26Right-handed alpha
Helix 24
AC6
B
28 42Right-handed alpha
Helix 25
AC7
B
46 60Right-handed alpha
Helix 26
AC8
B
62 77Right-handed alpha
Helix 27
AC9
B
80 94Right-handed alpha
Helix 28
AD1
B
96 111Right-handed alpha
Helix 29
AD2
B
114 137Right-handed alpha
Helix 30
AD3
B
140 144Right-handed 310
Helix 31
AD4
B
146 151Right-handed 310
Helix 32
AD5
B
152 156Right-handed 310
Helix 33
AD6
B
173 186Right-handed alpha
Helix 34
AD7
B
191 208Right-handed alpha
Helix 35
AD8
B
232 244Right-handed alpha
Helix 36
AD9
B
264 279Right-handed alpha
Helix 37
AE1
B
292 300Right-handed alpha
Helix 38
AE2
B
300 309Right-handed alpha
Helix 39
AE3
B
311 323Right-handed alpha
Helix 40
AE4
B
348 354Right-handed alpha
Helix 41
AE5
B
365 373Right-handed alpha
Helix 42
AE6
B
393 404Right-handed alpha
Helix 43
AE7
B
436 440Right-handed 310
Helix 44
AE8
B
477 482Right-handed alpha
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There are 6 sheets in PDB entry 7OBE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 215first strand
Strand 2
A
327 330parallel
Strand 3
A
334 336anti-parallel
Strand 4
A
408 411parallel
Strand 5
A
428 431parallel
Strand 6
A
420 423anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 286first strand
Strand 2
A
252 255parallel
Strand 3
A
222 226parallel
Strand 4
A
445 451anti-parallel
Strand 5
A
456 462anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 375first strand
Strand 2
A
390 392parallel
Strand 3
A
381 383anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 215first strand
Strand 2
B
327 330parallel
Strand 3
B
334 336anti-parallel
Strand 4
B
408 411parallel
Strand 5
B
428 431parallel
Strand 6
B
420 423anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 286first strand
Strand 2
B
252 255parallel
Strand 3
B
222 226parallel
Strand 4
B
445 451anti-parallel
Strand 5
B
457 462anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
374 375first strand
Strand 2
B
390 392parallel
Strand 3
B
381 383anti-parallel
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