Analysis of interatomic Contacts of Structural Units in PDB entry:
7OBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OBM entry

There is 1 chain in PDB entry 7OBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 90ASP 720
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 7OBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
93 98Right-handed alpha
Helix 2
AA2
A
149 152Right-handed 310
Helix 3
AA3
A
333 337Right-handed 310
Helix 4
AA4
A
491 500Right-handed alpha
Helix 5
AA5
A
516 522Right-handed alpha
Helix 6
AA6
A
524 527Right-handed 310
Helix 7
AA7
A
528 545Right-handed alpha
Helix 8
AA8
A
549 551Right-handed 310
Helix 9
AA9
A
561 572Right-handed alpha
Helix 10
AB1
A
573 576Right-handed 310
Helix 11
AB2
A
588 593Right-handed alpha
Helix 12
AB3
A
602 607Right-handed alpha
Helix 13
AB4
A
609 613Right-handed 310
Helix 14
AB5
A
614 619Right-handed alpha
Helix 15
AB6
A
619 624Right-handed alpha
Helix 16
AB7
A
625 628Right-handed 310
Helix 17
AB8
A
649 672Right-handed alpha
Helix 18
AB9
A
691 711Right-handed alpha
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There are 8 sheets in PDB entry 7OBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 117first strand
Strand 2
A
120 124anti-parallel
Strand 3
A
128 133anti-parallel
Strand 4
A
143 147anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 163first strand
Strand 2
A
169 176anti-parallel
Strand 3
A
182 188anti-parallel
Strand 4
A
194 200anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 208first strand
Strand 2
A
216 223anti-parallel
Strand 3
A
227 234anti-parallel
Strand 4
A
245 247anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 258first strand
Strand 2
A
264 270anti-parallel
Strand 3
A
275 281anti-parallel
Strand 4
A
290 291anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 305first strand
Strand 2
A
309 314anti-parallel
Strand 3
A
321 328anti-parallel
Strand 4
A
338 345anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 354first strand
Strand 2
A
358 365anti-parallel
Strand 3
A
368 375anti-parallel
Strand 4
A
381 383anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 393first strand
Strand 2
A
403 409anti-parallel
Strand 3
A
416 421anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 449first strand
Strand 2
A
455 462anti-parallel
Strand 3
A
503 507anti-parallel
Strand 4
A
474 478parallel
Strand 5
A
553 558parallel
Strand 6
A
578 582parallel
Strand 7
A
636 639parallel
Strand 8
A
680 682parallel
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