Analysis of interatomic Contacts of Structural Units in PDB entry:
7OBP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OBP entry

There are 6 chains in PDB entry 7OBP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 54	ASP 219
B	PRO 55	ASP 219
C	PRO 55	ASP 219
D	PRO 55	ASP 219
E	PRO 55	ASP 219
F	PRO 55	ASP 219

There are 20 helices in PDB entry 7OBP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	70	Right-handed alpha
Helix 2	AA2	A	71	72	Right-handed 310
Helix 3	AA3	A	73	77	Right-handed 310
Helix 4	AA4	A	93	102	Right-handed alpha
Helix 5	AA5	B	61	71	Right-handed alpha
Helix 6	AA6	B	72	77	Right-handed 310
Helix 7	AA7	B	93	102	Right-handed alpha
Helix 8	AA8	C	61	72	Right-handed alpha
Helix 9	AA9	C	73	77	Right-handed 310
Helix 10	AB1	C	93	102	Right-handed alpha
Helix 11	AB2	D	61	70	Right-handed alpha
Helix 12	AB3	D	71	72	Right-handed 310
Helix 13	AB4	D	73	77	Right-handed 310
Helix 14	AB5	D	93	102	Right-handed alpha
Helix 15	AB6	E	61	72	Right-handed alpha
Helix 16	AB7	E	73	77	Right-handed 310
Helix 17	AB8	E	93	102	Right-handed alpha
Helix 18	AB9	F	61	72	Right-handed alpha
Helix 19	AC1	F	73	77	Right-handed 310
Helix 20	AC2	F	93	102	Right-handed alpha

There are 12 sheets in PDB entry 7OBP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	86	first strand
Strand 2	A	207	217	anti-parallel
Strand 3	A	108	114	anti-parallel
Strand 4	A	119	124	anti-parallel
Strand 5	A	141	144	anti-parallel
Strand 6	A	150	152	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	86	first strand
Strand 2	A	207	217	anti-parallel
Strand 3	A	188	190	anti-parallel
Strand 4	A	180	183	anti-parallel
Strand 5	A	168	171	anti-parallel
Strand 6	A	162	164	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	86	first strand
Strand 2	B	207	217	anti-parallel
Strand 3	B	108	114	anti-parallel
Strand 4	B	119	124	anti-parallel
Strand 5	B	141	144	anti-parallel
Strand 6	B	150	153	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	86	first strand
Strand 2	B	207	217	anti-parallel
Strand 3	B	188	190	anti-parallel
Strand 4	B	180	183	anti-parallel
Strand 5	B	168	171	anti-parallel
Strand 6	B	162	164	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	86	first strand
Strand 2	C	207	217	anti-parallel
Strand 3	C	108	114	anti-parallel
Strand 4	C	119	124	anti-parallel
Strand 5	C	141	144	anti-parallel
Strand 6	C	150	153	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	86	first strand
Strand 2	C	207	217	anti-parallel
Strand 3	C	188	190	anti-parallel
Strand 4	C	180	183	anti-parallel
Strand 5	C	168	171	anti-parallel
Strand 6	C	162	164	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	86	first strand
Strand 2	D	207	217	anti-parallel
Strand 3	D	108	114	anti-parallel
Strand 4	D	119	124	anti-parallel
Strand 5	D	141	144	anti-parallel
Strand 6	D	150	153	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	86	first strand
Strand 2	D	207	217	anti-parallel
Strand 3	D	188	190	anti-parallel
Strand 4	D	180	183	anti-parallel
Strand 5	D	168	171	anti-parallel
Strand 6	D	162	164	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	82	86	first strand
Strand 2	E	207	217	anti-parallel
Strand 3	E	108	114	anti-parallel
Strand 4	E	119	124	anti-parallel
Strand 5	E	141	144	anti-parallel
Strand 6	E	150	153	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	82	86	first strand
Strand 2	E	207	217	anti-parallel
Strand 3	E	188	190	anti-parallel
Strand 4	E	180	183	anti-parallel
Strand 5	E	168	171	anti-parallel
Strand 6	E	162	164	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	82	86	first strand
Strand 2	F	207	217	anti-parallel
Strand 3	F	108	114	anti-parallel
Strand 4	F	119	124	anti-parallel
Strand 5	F	141	144	anti-parallel
Strand 6	F	150	152	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	82	86	first strand
Strand 2	F	207	217	anti-parallel
Strand 3	F	188	190	anti-parallel
Strand 4	F	180	183	anti-parallel
Strand 5	F	168	171	anti-parallel
Strand 6	F	162	164	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OBP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OBP