Analysis of interatomic Contacts of Structural Units in PDB entry:
7OCC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OCC entry

There are 4 chains in PDB entry 7OCC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 3	ALA 373
B	ASN 4	LEU 378
C	PHE 3	ALA 373
D	ASN 4	LEU 378

There are 42 helices in PDB entry 7OCC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	30	Right-handed alpha
Helix 2	AA2	A	48	63	Right-handed alpha
Helix 3	AA3	A	72	86	Right-handed alpha
Helix 4	AA4	A	111	122	Right-handed alpha
Helix 5	AA5	A	136	151	Right-handed alpha
Helix 6	AA6	A	163	176	Right-handed alpha
Helix 7	AA7	A	187	201	Right-handed alpha
Helix 8	AA8	A	222	226	Right-handed 310
Helix 9	AA9	A	242	259	Right-handed alpha
Helix 10	AB1	A	269	293	Right-handed alpha
Helix 11	AB2	A	315	326	Right-handed alpha
Helix 12	AB3	B	16	31	Right-handed alpha
Helix 13	AB4	B	48	62	Right-handed alpha
Helix 14	AB5	B	75	87	Right-handed alpha
Helix 15	AB6	B	111	122	Right-handed alpha
Helix 16	AB7	B	137	151	Right-handed alpha
Helix 17	AB8	B	166	181	Right-handed alpha
Helix 18	AB9	B	191	203	Right-handed alpha
Helix 19	AC1	B	246	258	Right-handed alpha
Helix 20	AC2	B	273	297	Right-handed alpha
Helix 21	AC3	B	319	329	Right-handed alpha
Helix 22	AC4	C	18	30	Right-handed alpha
Helix 23	AC5	C	48	63	Right-handed alpha
Helix 24	AC6	C	72	86	Right-handed alpha
Helix 25	AC7	C	111	122	Right-handed alpha
Helix 26	AC8	C	136	151	Right-handed alpha
Helix 27	AC9	C	163	176	Right-handed alpha
Helix 28	AD1	C	187	201	Right-handed alpha
Helix 29	AD2	C	222	226	Right-handed 310
Helix 30	AD3	C	242	259	Right-handed alpha
Helix 31	AD4	C	269	293	Right-handed alpha
Helix 32	AD5	C	315	326	Right-handed alpha
Helix 33	AD6	D	16	31	Right-handed alpha
Helix 34	AD7	D	48	62	Right-handed alpha
Helix 35	AD8	D	75	87	Right-handed alpha
Helix 36	AD9	D	111	122	Right-handed alpha
Helix 37	AE1	D	137	151	Right-handed alpha
Helix 38	AE2	D	166	181	Right-handed alpha
Helix 39	AE3	D	191	203	Right-handed alpha
Helix 40	AE4	D	246	258	Right-handed alpha
Helix 41	AE5	D	273	297	Right-handed alpha
Helix 42	AE6	D	319	329	Right-handed alpha

There are 16 sheets in PDB entry 7OCC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	36	38	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	41	43	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	90	92	parallel
Strand 3	A	104	106	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	158	first strand
Strand 2	A	126	131	parallel
Strand 3	A	180	185	parallel
Strand 4	A	208	213	parallel
Strand 5	A	231	236	parallel
Strand 6	A	347	354	anti-parallel
Strand 7	A	357	365	anti-parallel
Strand 8	A	371	372	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	329	first strand
Strand 2	A	334	335	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	44	first strand
Strand 2	B	5	13	parallel
Strand 3	B	66	68	parallel
Strand 4	B	89	92	parallel
Strand 5	B	105	106	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	158	first strand
Strand 2	B	126	131	parallel
Strand 3	B	185	189	parallel
Strand 4	B	213	216	parallel
Strand 5	B	235	240	parallel
Strand 6	B	353	358	anti-parallel
Strand 7	B	361	368	anti-parallel
Strand 8	B	374	376	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	333	first strand
Strand 2	B	338	341	anti-parallel
Strand 3	B	347	348	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	8	first strand
Strand 2	C	36	38	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	41	43	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	68	first strand
Strand 2	C	90	92	parallel
Strand 3	C	104	106	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	158	first strand
Strand 2	C	126	131	parallel
Strand 3	C	180	185	parallel
Strand 4	C	208	213	parallel
Strand 5	C	231	236	parallel
Strand 6	C	347	354	anti-parallel
Strand 7	C	357	365	anti-parallel
Strand 8	C	371	372	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	329	first strand
Strand 2	C	334	335	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	44	first strand
Strand 2	D	5	13	parallel
Strand 3	D	66	68	parallel
Strand 4	D	89	92	parallel
Strand 5	D	105	106	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	158	first strand
Strand 2	D	126	131	parallel
Strand 3	D	185	189	parallel
Strand 4	D	213	216	parallel
Strand 5	D	235	240	parallel
Strand 6	D	353	358	anti-parallel
Strand 7	D	361	368	anti-parallel
Strand 8	D	374	376	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	332	333	first strand
Strand 2	D	338	341	anti-parallel
Strand 3	D	347	348	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OCC

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OCC