Analysis of interatomic Contacts of Structural Units in PDB entry:
7OCE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OCE entry

There are 8 chains in PDB entry 7OCE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 387	ARG 820
B	VAL 396	LYS 823
G	ALA 2	SER 159
I	GLU 16	ASP 240
D	VAL 396	LYS 823
J	GLU 16	ASP 240
C	GLN 387	ARG 820
E	ALA 2	SER 159

There are 84 helices in PDB entry 7OCE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	407	411	Right-handed 310
Helix 2	AA2	A	412	415	Right-handed 310
Helix 3	AA3	A	419	433	Right-handed alpha
Helix 4	AA4	A	458	465	Right-handed alpha
Helix 5	AA5	A	478	484	Right-handed alpha
Helix 6	AA6	A	518	541	Right-handed alpha
Helix 7	AA7	A	568	581	Right-handed alpha
Helix 8	AA8	A	591	626	Right-handed alpha
Helix 9	AA9	A	631	638	Right-handed alpha
Helix 10	AB1	A	649	657	Right-handed alpha
Helix 11	AB2	A	660	670	Right-handed alpha
Helix 12	AB3	A	681	692	Right-handed alpha
Helix 13	AB4	A	702	710	Right-handed alpha
Helix 14	AB5	A	739	753	Right-handed alpha
Helix 15	AB6	A	753	764	Right-handed alpha
Helix 16	AB7	A	788	820	Right-handed alpha
Helix 17	AB8	B	423	437	Right-handed alpha
Helix 18	AB9	B	462	469	Right-handed alpha
Helix 19	AC1	B	482	487	Right-handed alpha
Helix 20	AC2	B	515	519	Right-handed 310
Helix 21	AC3	B	522	547	Right-handed alpha
Helix 22	AC4	B	572	585	Right-handed alpha
Helix 23	AC5	B	595	626	Right-handed alpha
Helix 24	AC6	B	636	642	Right-handed alpha
Helix 25	AC7	B	653	661	Right-handed alpha
Helix 26	AC8	B	664	676	Right-handed alpha
Helix 27	AC9	B	685	696	Right-handed alpha
Helix 28	AD1	B	706	713	Right-handed alpha
Helix 29	AD2	B	742	757	Right-handed alpha
Helix 30	AD3	B	757	767	Right-handed alpha
Helix 31	AD4	B	788	791	Right-handed 310
Helix 32	AD5	B	792	822	Right-handed alpha
Helix 33	AD6	G	4	40	Right-handed alpha
Helix 34	AD7	G	46	67	Right-handed alpha
Helix 35	AD8	G	67	85	Right-handed alpha
Helix 36	AD9	G	87	108	Right-handed alpha
Helix 37	AE1	G	124	159	Right-handed alpha
Helix 38	AE2	I	17	41	Right-handed alpha
Helix 39	AE3	I	116	128	Right-handed alpha
Helix 40	AE4	I	128	149	Right-handed alpha
Helix 41	AE5	I	157	184	Right-handed alpha
Helix 42	AE6	I	202	240	Right-handed alpha
Helix 43	AE7	D	423	437	Right-handed alpha
Helix 44	AE8	D	462	469	Right-handed alpha
Helix 45	AE9	D	482	487	Right-handed alpha
Helix 46	AF1	D	515	519	Right-handed 310
Helix 47	AF2	D	522	547	Right-handed alpha
Helix 48	AF3	D	572	585	Right-handed alpha
Helix 49	AF4	D	595	626	Right-handed alpha
Helix 50	AF5	D	636	642	Right-handed alpha
Helix 51	AF6	D	653	661	Right-handed alpha
Helix 52	AF7	D	664	676	Right-handed alpha
Helix 53	AF8	D	685	696	Right-handed alpha
Helix 54	AF9	D	706	713	Right-handed alpha
Helix 55	AG1	D	742	757	Right-handed alpha
Helix 56	AG2	D	757	767	Right-handed alpha
Helix 57	AG3	D	788	791	Right-handed 310
Helix 58	AG4	D	792	822	Right-handed alpha
Helix 59	AG5	J	17	41	Right-handed alpha
Helix 60	AG6	J	116	128	Right-handed alpha
Helix 61	AG7	J	128	149	Right-handed alpha
Helix 62	AG8	J	157	184	Right-handed alpha
Helix 63	AG9	J	202	240	Right-handed alpha
Helix 64	AH1	C	407	411	Right-handed 310
Helix 65	AH2	C	412	415	Right-handed 310
Helix 66	AH3	C	419	433	Right-handed alpha
Helix 67	AH4	C	458	465	Right-handed alpha
Helix 68	AH5	C	478	484	Right-handed alpha
Helix 69	AH6	C	518	541	Right-handed alpha
Helix 70	AH7	C	568	581	Right-handed alpha
Helix 71	AH8	C	591	626	Right-handed alpha
Helix 72	AH9	C	631	638	Right-handed alpha
Helix 73	AI1	C	649	657	Right-handed alpha
Helix 74	AI2	C	660	670	Right-handed alpha
Helix 75	AI3	C	681	692	Right-handed alpha
Helix 76	AI4	C	702	710	Right-handed alpha
Helix 77	AI5	C	739	753	Right-handed alpha
Helix 78	AI6	C	753	764	Right-handed alpha
Helix 79	AI7	C	788	820	Right-handed alpha
Helix 80	AI8	E	4	40	Right-handed alpha
Helix 81	AI9	E	46	67	Right-handed alpha
Helix 82	AJ1	E	67	85	Right-handed alpha
Helix 83	AJ2	E	87	108	Right-handed alpha
Helix 84	AJ3	E	124	159	Right-handed alpha

There are 21 sheets in PDB entry 7OCE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	438	first strand
Strand 2	A	391	394	parallel
Strand 3	A	470	476	parallel
Strand 4	A	726	733	anti-parallel
Strand 5	A	485	486	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	438	first strand
Strand 2	A	391	394	parallel
Strand 3	A	470	476	parallel
Strand 4	A	726	733	anti-parallel
Strand 5	A	492	494	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	417	418	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	644	first strand
Strand 2	A	696	701	parallel
Strand 3	A	496	501	anti-parallel
Strand 4	A	716	719	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	398	first strand
Strand 2	B	474	475	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	453	first strand
Strand 2	B	460	461	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	735	737	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	496	498	first strand
Strand 2	B	730	732	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	700	705	parallel
Strand 3	B	500	505	anti-parallel
Strand 4	B	720	723	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	100	102	first strand
Strand 2	I	88	91	anti-parallel
Strand 3	I	80	84	anti-parallel
Strand 4	I	45	49	anti-parallel
Strand 5	I	200	201	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	421	422	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	453	first strand
Strand 2	D	460	461	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	491	first strand
Strand 2	D	735	737	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	496	498	first strand
Strand 2	D	730	732	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	648	first strand
Strand 2	D	700	705	parallel
Strand 3	D	500	505	anti-parallel
Strand 4	D	720	723	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	100	102	first strand
Strand 2	J	88	91	anti-parallel
Strand 3	J	80	84	anti-parallel
Strand 4	J	45	49	anti-parallel
Strand 5	J	200	201	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	436	438	first strand
Strand 2	C	391	394	parallel
Strand 3	C	470	476	parallel
Strand 4	C	726	733	anti-parallel
Strand 5	C	485	486	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	436	438	first strand
Strand 2	C	391	394	parallel
Strand 3	C	470	476	parallel
Strand 4	C	726	733	anti-parallel
Strand 5	C	492	494	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	404	first strand
Strand 2	C	417	418	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	644	first strand
Strand 2	C	696	701	parallel
Strand 3	C	496	501	anti-parallel
Strand 4	C	716	719	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OCE

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OCE