Analysis of interatomic Contacts of Structural Units in PDB entry:
7OCF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OCF entry

There are 8 chains in PDB entry 7OCF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 390	ARG 815
B	VAL 395	ARG 819
G	ALA 2	SER 159
I	GLU 16	HIS 234
C	THR 390	ARG 815
E	ALA 2	SER 159
J	GLU 16	HIS 234
D	VAL 395	ARG 819

There are 88 helices in PDB entry 7OCF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	413	417	Right-handed 310
Helix 2	AA2	A	419	433	Right-handed alpha
Helix 3	AA3	A	458	465	Right-handed alpha
Helix 4	AA4	A	478	483	Right-handed alpha
Helix 5	AA5	A	511	515	Right-handed 310
Helix 6	AA6	A	518	541	Right-handed alpha
Helix 7	AA7	A	543	548	Right-handed alpha
Helix 8	AA8	A	569	581	Right-handed alpha
Helix 9	AA9	A	591	621	Right-handed alpha
Helix 10	AB1	A	631	638	Right-handed alpha
Helix 11	AB2	A	649	658	Right-handed alpha
Helix 12	AB3	A	660	672	Right-handed alpha
Helix 13	AB4	A	681	692	Right-handed alpha
Helix 14	AB5	A	703	710	Right-handed alpha
Helix 15	AB6	A	739	752	Right-handed alpha
Helix 16	AB7	A	753	764	Right-handed alpha
Helix 17	AB8	A	784	815	Right-handed alpha
Helix 18	AB9	B	411	415	Right-handed 310
Helix 19	AC1	B	416	419	Right-handed 310
Helix 20	AC2	B	423	437	Right-handed alpha
Helix 21	AC3	B	462	469	Right-handed alpha
Helix 22	AC4	B	482	487	Right-handed alpha
Helix 23	AC5	B	522	546	Right-handed alpha
Helix 24	AC6	B	573	585	Right-handed alpha
Helix 25	AC7	B	595	618	Right-handed alpha
Helix 26	AC8	B	620	626	Right-handed alpha
Helix 27	AC9	B	635	642	Right-handed alpha
Helix 28	AD1	B	653	661	Right-handed alpha
Helix 29	AD2	B	664	676	Right-handed alpha
Helix 30	AD3	B	685	694	Right-handed alpha
Helix 31	AD4	B	705	715	Right-handed alpha
Helix 32	AD5	B	742	756	Right-handed alpha
Helix 33	AD6	B	757	767	Right-handed alpha
Helix 34	AD7	B	792	819	Right-handed alpha
Helix 35	AD8	G	4	40	Right-handed alpha
Helix 36	AD9	G	49	85	Right-handed alpha
Helix 37	AE1	G	88	107	Right-handed alpha
Helix 38	AE2	G	124	159	Right-handed alpha
Helix 39	AE3	I	19	42	Right-handed alpha
Helix 40	AE4	I	111	114	Right-handed 310
Helix 41	AE5	I	115	128	Right-handed alpha
Helix 42	AE6	I	128	149	Right-handed alpha
Helix 43	AE7	I	155	186	Right-handed alpha
Helix 44	AE8	I	202	233	Right-handed alpha
Helix 45	AE9	C	413	417	Right-handed 310
Helix 46	AF1	C	419	433	Right-handed alpha
Helix 47	AF2	C	458	465	Right-handed alpha
Helix 48	AF3	C	478	483	Right-handed alpha
Helix 49	AF4	C	511	515	Right-handed 310
Helix 50	AF5	C	518	541	Right-handed alpha
Helix 51	AF6	C	543	548	Right-handed alpha
Helix 52	AF7	C	569	581	Right-handed alpha
Helix 53	AF8	C	591	621	Right-handed alpha
Helix 54	AF9	C	631	638	Right-handed alpha
Helix 55	AG1	C	649	658	Right-handed alpha
Helix 56	AG2	C	660	672	Right-handed alpha
Helix 57	AG3	C	681	692	Right-handed alpha
Helix 58	AG4	C	703	710	Right-handed alpha
Helix 59	AG5	C	739	752	Right-handed alpha
Helix 60	AG6	C	753	764	Right-handed alpha
Helix 61	AG7	C	784	815	Right-handed alpha
Helix 62	AG8	E	4	40	Right-handed alpha
Helix 63	AG9	E	49	85	Right-handed alpha
Helix 64	AH1	E	88	107	Right-handed alpha
Helix 65	AH2	E	124	159	Right-handed alpha
Helix 66	AH3	J	19	42	Right-handed alpha
Helix 67	AH4	J	111	114	Right-handed 310
Helix 68	AH5	J	115	128	Right-handed alpha
Helix 69	AH6	J	128	149	Right-handed alpha
Helix 70	AH7	J	155	186	Right-handed alpha
Helix 71	AH8	J	202	233	Right-handed alpha
Helix 72	AH9	D	411	415	Right-handed 310
Helix 73	AI1	D	416	419	Right-handed 310
Helix 74	AI2	D	423	437	Right-handed alpha
Helix 75	AI3	D	462	469	Right-handed alpha
Helix 76	AI4	D	482	487	Right-handed alpha
Helix 77	AI5	D	522	546	Right-handed alpha
Helix 78	AI6	D	573	585	Right-handed alpha
Helix 79	AI7	D	595	618	Right-handed alpha
Helix 80	AI8	D	620	626	Right-handed alpha
Helix 81	AI9	D	635	642	Right-handed alpha
Helix 82	AJ1	D	653	661	Right-handed alpha
Helix 83	AJ2	D	664	676	Right-handed alpha
Helix 84	AJ3	D	685	694	Right-handed alpha
Helix 85	AJ4	D	705	715	Right-handed alpha
Helix 86	AJ5	D	742	756	Right-handed alpha
Helix 87	AJ6	D	757	767	Right-handed alpha
Helix 88	AJ7	D	792	819	Right-handed alpha

There are 18 sheets in PDB entry 7OCF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	487	first strand
Strand 2	A	731	732	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	494	first strand
Strand 2	A	726	727	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	645	first strand
Strand 2	A	696	701	parallel
Strand 3	A	496	501	anti-parallel
Strand 4	A	716	719	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	399	first strand
Strand 2	B	442	444	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	735	737	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	649	first strand
Strand 2	B	700	704	parallel
Strand 3	B	501	505	anti-parallel
Strand 4	B	720	721	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	80	82	first strand
Strand 2	I	45	49	anti-parallel
Strand 3	I	199	201	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	88	90	first strand
Strand 2	I	100	102	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	486	487	first strand
Strand 2	C	731	732	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	493	494	first strand
Strand 2	C	726	727	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	645	first strand
Strand 2	C	696	701	parallel
Strand 3	C	496	501	anti-parallel
Strand 4	C	716	719	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	80	82	first strand
Strand 2	J	45	49	anti-parallel
Strand 3	J	199	201	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	88	90	first strand
Strand 2	J	100	102	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	397	399	first strand
Strand 2	D	442	444	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	421	422	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	491	first strand
Strand 2	D	735	737	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	649	first strand
Strand 2	D	700	704	parallel
Strand 3	D	501	505	anti-parallel
Strand 4	D	720	721	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OCF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OCF