Analysis of interatomic Contacts of Structural Units in PDB entry:
7OCI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OCI entry

There are 9 chains in PDB entry 7OCI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 25	LEU 470
B	PHE 23	ASN 130
C	LYS 214	PHE 332
D	MET 1	LYS 35
E	THR 2	VAL 86
F	SER 6	VAL 718
G	ARG 25	SER 417
H	HIS 25	GLY 283
I	UNK 1	UNK 24

There are 60 helices in PDB entry 7OCI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	71	76	Right-handed alpha
Helix 2	AA2	A	269	277	Right-handed alpha
Helix 3	AA3	A	442	447	Right-handed alpha
Helix 4	AA4	A	447	470	Right-handed alpha
Helix 5	AA5	B	24	41	Right-handed alpha
Helix 6	AA6	B	44	68	Right-handed alpha
Helix 7	AA7	B	73	100	Right-handed alpha
Helix 8	AA8	B	108	130	Right-handed alpha
Helix 9	AA9	C	215	232	Right-handed alpha
Helix 10	AB1	C	233	240	Right-handed alpha
Helix 11	AB2	C	264	288	Right-handed alpha
Helix 12	AB3	C	289	291	Right-handed 310
Helix 13	AB4	C	295	325	Right-handed alpha
Helix 14	AB5	D	3	33	Right-handed alpha
Helix 15	AB6	E	3	13	Right-handed alpha
Helix 16	AB7	E	24	49	Right-handed alpha
Helix 17	AB8	E	52	83	Right-handed alpha
Helix 18	AB9	F	8	31	Right-handed alpha
Helix 19	AC1	F	33	38	Right-handed alpha
Helix 20	AC2	F	47	61	Right-handed alpha
Helix 21	AC3	F	62	68	Right-handed alpha
Helix 22	AC4	F	89	104	Right-handed alpha
Helix 23	AC5	F	110	138	Right-handed alpha
Helix 24	AC6	F	140	152	Right-handed alpha
Helix 25	AC7	F	153	158	Right-handed alpha
Helix 26	AC8	F	167	189	Right-handed alpha
Helix 27	AC9	F	191	208	Right-handed alpha
Helix 28	AD1	F	210	228	Right-handed alpha
Helix 29	AD2	F	232	251	Right-handed alpha
Helix 30	AD3	F	258	263	Right-handed alpha
Helix 31	AD4	F	263	288	Right-handed alpha
Helix 32	AD5	F	356	362	Right-handed alpha
Helix 33	AD6	F	369	380	Right-handed alpha
Helix 34	AD7	F	382	402	Right-handed alpha
Helix 35	AD8	F	405	430	Right-handed alpha
Helix 36	AD9	F	442	473	Right-handed alpha
Helix 37	AE1	F	495	507	Right-handed alpha
Helix 38	AE2	F	519	526	Right-handed alpha
Helix 39	AE3	F	540	550	Right-handed alpha
Helix 40	AE4	F	553	561	Right-handed alpha
Helix 41	AE5	F	586	596	Right-handed alpha
Helix 42	AE6	F	603	608	Right-handed alpha
Helix 43	AE7	F	627	634	Right-handed alpha
Helix 44	AE8	F	636	641	Right-handed alpha
Helix 45	AE9	F	691	701	Right-handed alpha
Helix 46	AF1	G	36	39	Right-handed 310
Helix 47	AF2	G	40	49	Right-handed alpha
Helix 48	AF3	G	86	94	Right-handed alpha
Helix 49	AF4	G	95	105	Right-handed alpha
Helix 50	AF5	G	119	130	Right-handed alpha
Helix 51	AF6	G	156	158	Right-handed 310
Helix 52	AF7	G	211	215	Right-handed 310
Helix 53	AF8	G	246	258	Right-handed alpha
Helix 54	AF9	G	379	383	Right-handed 310
Helix 55	AG1	G	393	414	Right-handed alpha
Helix 56	AG2	H	119	129	Right-handed alpha
Helix 57	AG3	H	192	216	Right-handed alpha
Helix 58	AG4	H	227	252	Right-handed alpha
Helix 59	AG5	H	256	282	Right-handed alpha
Helix 60	AG6	I	2	21	Right-handed alpha

There are 21 sheets in PDB entry 7OCI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	84	first strand
Strand 2	A	128	137	anti-parallel
Strand 3	A	48	57	anti-parallel
Strand 4	A	31	41	anti-parallel
Strand 5	A	174	178	parallel
Strand 6	A	202	205	anti-parallel
Strand 7	A	196	198	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	70	first strand
Strand 2	A	113	117	anti-parallel
Strand 3	A	95	96	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	143	first strand
Strand 2	A	155	161	anti-parallel
Strand 3	A	219	225	anti-parallel
Strand 4	A	183	185	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	310	first strand
Strand 2	A	300	306	anti-parallel
Strand 3	A	334	344	anti-parallel
Strand 4	A	248	259	anti-parallel
Strand 5	A	231	241	anti-parallel
Strand 6	A	377	383	parallel
Strand 7	A	416	423	anti-parallel
Strand 8	A	400	406	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	293	first strand
Strand 2	A	320	323	anti-parallel
Strand 3	A	314	317	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	351	first strand
Strand 2	A	358	364	anti-parallel
Strand 3	A	434	440	anti-parallel
Strand 4	A	388	393	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	A	426	427	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	247	first strand
Strand 2	C	253	254	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	70	71	first strand
Strand 2	F	80	81	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	530	531	first strand
Strand 2	F	512	514	parallel
Strand 3	F	568	572	parallel
Strand 4	F	677	682	anti-parallel
Strand 5	F	666	671	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	646	647	first strand
Strand 2	F	654	655	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	55	57	first strand
Strand 2	G	27	29	parallel
Strand 3	G	78	81	parallel
Strand 4	G	108	112	parallel
Strand 5	G	228	232	parallel
Strand 6	G	218	222	anti-parallel
Strand 7	G	188	190	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	131	132	first strand
Strand 2	G	181	182	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	139	141	first strand
Strand 2	G	199	201	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	151	154	first strand
Strand 2	G	171	174	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	263	273	first strand
Strand 2	G	289	299	anti-parallel
Strand 3	G	337	340	anti-parallel
Strand 4	G	328	332	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	304	306	first strand
Strand 2	G	289	299	anti-parallel
Strand 3	G	344	345	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	321	326	first strand
Strand 2	G	313	317	anti-parallel
Strand 3	G	351	356	anti-parallel
Strand 4	G	371	375	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	358	359	first strand
Strand 2	G	367	368	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	60	first strand
Strand 2	H	67	70	anti-parallel
Strand 3	H	26	33	anti-parallel
Strand 4	H	106	113	parallel
Strand 5	H	99	103	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	92	96	first strand
Strand 2	H	82	87	anti-parallel
Strand 3	H	133	138	anti-parallel
Strand 4	H	151	157	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OCI

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OCI