Analysis of interatomic Contacts of Structural Units in PDB entry:
7OCU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OCU entry

There are 2 chains in PDB entry 7OCU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2LEU 692
B
 VAL 2ILE 567
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 7OCU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 40Right-handed alpha
Helix 2
AA2
A
45 53Right-handed alpha
Helix 3
AA3
A
56 69Right-handed alpha
Helix 4
AA4
A
73 93Right-handed alpha
Helix 5
AA5
A
99 109Right-handed alpha
Helix 6
AA6
A
121 132Right-handed alpha
Helix 7
AA7
A
134 138Right-handed 310
Helix 8
AA8
A
145 147Right-handed 310
Helix 9
AA9
A
154 164Right-handed alpha
Helix 10
AB1
A
167 169Right-handed 310
Helix 11
AB2
A
177 187Right-handed alpha
Helix 12
AB3
A
201 208Right-handed alpha
Helix 13
AB4
A
214 223Right-handed alpha
Helix 14
AB5
A
253 259Right-handed alpha
Helix 15
AB6
A
259 267Right-handed alpha
Helix 16
AB7
A
282 293Right-handed alpha
Helix 17
AB8
A
301 303Right-handed 310
Helix 18
AB9
A
318 328Right-handed alpha
Helix 19
AC1
A
337 339Right-handed 310
Helix 20
AC2
A
340 358Right-handed alpha
Helix 21
AC3
A
377 395Right-handed alpha
Helix 22
AC4
A
396 407Right-handed alpha
Helix 23
AC5
A
422 444Right-handed alpha
Helix 24
AC6
A
459 478Right-handed alpha
Helix 25
AC7
A
479 486Right-handed 310
Helix 26
AC8
A
505 509Right-handed 310
Helix 27
AC9
A
520 530Right-handed alpha
Helix 28
AD1
A
531 546Right-handed alpha
Helix 29
AD2
A
549 554Right-handed alpha
Helix 30
AD3
A
556 578Right-handed alpha
Helix 31
AD4
A
581 597Right-handed alpha
Helix 32
AD5
A
603 608Right-handed alpha
Helix 33
AD6
A
610 615Right-handed alpha
Helix 34
AD7
A
621 631Right-handed alpha
Helix 35
AD8
A
635 652Right-handed alpha
Helix 36
AD9
A
656 671Right-handed alpha
Helix 37
AE1
A
674 692Right-handed alpha
Helix 38
AE2
B
24 38Right-handed alpha
Helix 39
AE3
B
45 52Right-handed alpha
Helix 40
AE4
B
56 68Right-handed alpha
Helix 41
AE5
B
75 93Right-handed alpha
Helix 42
AE6
B
99 110Right-handed alpha
Helix 43
AE7
B
121 132Right-handed alpha
Helix 44
AE8
B
134 138Right-handed 310
Helix 45
AE9
B
154 164Right-handed alpha
Helix 46
AF1
B
167 169Right-handed 310
Helix 47
AF2
B
177 187Right-handed alpha
Helix 48
AF3
B
201 208Right-handed alpha
Helix 49
AF4
B
214 224Right-handed alpha
Helix 50
AF5
B
253 259Right-handed alpha
Helix 51
AF6
B
259 267Right-handed alpha
Helix 52
AF7
B
282 293Right-handed alpha
Helix 53
AF8
B
301 303Right-handed 310
Helix 54
AF9
B
318 328Right-handed alpha
Helix 55
AG1
B
337 339Right-handed 310
Helix 56
AG2
B
340 358Right-handed alpha
Helix 57
AG3
B
377 395Right-handed alpha
Helix 58
AG4
B
396 407Right-handed alpha
Helix 59
AG5
B
422 444Right-handed alpha
Helix 60
AG6
B
459 478Right-handed alpha
Helix 61
AG7
B
479 485Right-handed 310
Helix 62
AG8
B
519 531Right-handed alpha
Helix 63
AG9
B
531 546Right-handed alpha
Helix 64
AH1
B
549 554Right-handed alpha
Helix 65
AH2
B
556 578Right-handed alpha
Helix 66
AH3
B
584 598Right-handed alpha
Helix 67
AH4
B
603 609Right-handed alpha
Helix 68
AH5
B
610 615Right-handed alpha
Helix 69
AH6
B
621 631Right-handed alpha
Helix 70
AH7
B
635 652Right-handed alpha
Helix 71
AH8
B
656 671Right-handed alpha
Helix 72
AH9
B
674 693Right-handed alpha
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There are 8 sheets in PDB entry 7OCU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
8 10anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 143first strand
Strand 2
A
113 118parallel
Strand 3
A
12 15parallel
Strand 4
A
171 175parallel
Strand 5
A
190 194parallel
Strand 6
A
210 212parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 315first strand
Strand 2
A
275 280parallel
Strand 3
A
246 250parallel
Strand 4
A
329 334parallel
Strand 5
A
368 371parallel
Strand 6
A
408 413parallel
Strand 7
A
499 502anti-parallel
Strand 8
A
514 517parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 308first strand
Strand 2
A
295 299anti-parallel
Strand 3
A
489 493parallel
Strand 4
A
418 420anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
9 10anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 142first strand
Strand 2
B
113 117parallel
Strand 3
B
12 15parallel
Strand 4
B
171 175parallel
Strand 5
B
190 194parallel
Strand 6
B
210 212parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
311 315first strand
Strand 2
B
275 280parallel
Strand 3
B
246 250parallel
Strand 4
B
329 334parallel
Strand 5
B
368 371parallel
Strand 6
B
408 413parallel
Strand 7
B
499 502anti-parallel
Strand 8
B
514 517parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
304 308first strand
Strand 2
B
295 299anti-parallel
Strand 3
B
489 493parallel
Strand 4
B
418 420anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il