Analysis of interatomic Contacts of Structural Units in PDB entry:
7OCY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OCY entry

There are 3 chains in PDB entry 7OCY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2THR 564
B
 THR 2GLN 585
C
 GLN 6SER 113
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 7OCY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 9Right-handed alpha
Helix 2
AA2
A
11 46Right-handed alpha
Helix 3
AA3
A
47 97Right-handed alpha
Helix 4
AA4
A
99 105Right-handed alpha
Helix 5
AA5
A
107 132Right-handed alpha
Helix 6
AA6
A
134 151Right-handed alpha
Helix 7
AA7
A
154 200Right-handed alpha
Helix 8
AA8
A
200 207Right-handed alpha
Helix 9
AA9
A
208 258Right-handed alpha
Helix 10
AB1
A
266 311Right-handed alpha
Helix 11
AB2
A
370 376Right-handed alpha
Helix 12
AB3
A
398 405Right-handed alpha
Helix 13
AB4
A
420 426Right-handed alpha
Helix 14
AB5
A
432 444Right-handed alpha
Helix 15
AB6
A
445 451Right-handed alpha
Helix 16
AB7
A
468 483Right-handed alpha
Helix 17
AB8
A
501 510Right-handed alpha
Helix 18
AB9
A
524 529Right-handed alpha
Helix 19
AC1
A
547 555Right-handed alpha
Helix 20
AC2
A
555 563Right-handed alpha
Helix 21
AC3
B
3 16Right-handed alpha
Helix 22
AC4
B
18 60Right-handed alpha
Helix 23
AC5
B
64 112Right-handed alpha
Helix 24
AC6
B
115 122Right-handed alpha
Helix 25
AC7
B
123 133Right-handed alpha
Helix 26
AC8
B
133 167Right-handed alpha
Helix 27
AC9
B
168 175Right-handed alpha
Helix 28
AD1
B
177 224Right-handed alpha
Helix 29
AD2
B
225 253Right-handed alpha
Helix 30
AD3
B
253 280Right-handed alpha
Helix 31
AD4
B
283 330Right-handed alpha
Helix 32
AD5
B
389 397Right-handed alpha
Helix 33
AD6
B
418 425Right-handed alpha
Helix 34
AD7
B
439 446Right-handed alpha
Helix 35
AD8
B
454 463Right-handed alpha
Helix 36
AD9
B
465 472Right-handed alpha
Helix 37
AE1
B
474 478Right-handed 310
Helix 38
AE2
B
488 504Right-handed alpha
Helix 39
AE3
B
518 536Right-handed alpha
Helix 40
AE4
B
544 549Right-handed 310
Helix 41
AE5
B
567 574Right-handed alpha
Helix 42
AE6
B
576 583Right-handed alpha
Helix 43
AE7
C
61 64Right-handed 310
Helix 44
AE8
C
86 90Right-handed 310
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There are 7 sheets in PDB entry 7OCY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 353first strand
Strand 2
A
329 336anti-parallel
Strand 3
A
384 389anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 408first strand
Strand 2
A
487 491parallel
Strand 3
A
517 521parallel
Strand 4
A
358 363parallel
Strand 5
A
533 538parallel
Strand 6
A
541 546anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 419first strand
Strand 2
A
459 460anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
366 369first strand
Strand 2
B
351 357anti-parallel
Strand 3
B
404 408anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
426 429first strand
Strand 2
B
507 510parallel
Strand 3
B
537 541parallel
Strand 4
B
378 382parallel
Strand 5
B
553 557parallel
Strand 6
B
562 566anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 10first strand
Strand 2
C
21 27anti-parallel
Strand 3
C
77 82anti-parallel
Strand 4
C
68 72anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 16first strand
Strand 2
C
108 113parallel
Strand 3
C
91 98anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
46 51anti-parallel
Strand 6
C
57 59anti-parallel
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