Analysis of interatomic Contacts of Structural Units in PDB entry:
7OD1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OD1 entry

There are 2 chains in PDB entry 7OD1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 58THR 493
B
 GLU 58THR 493
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 7OD1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 85Right-handed alpha
Helix 2
AA2
A
87 98Right-handed alpha
Helix 3
AA3
A
101 112Right-handed alpha
Helix 4
AA4
A
112 120Right-handed alpha
Helix 5
AA5
A
162 175Right-handed alpha
Helix 6
AA6
A
193 198Right-handed alpha
Helix 7
AA7
A
199 201Right-handed 310
Helix 8
AA8
A
203 222Right-handed alpha
Helix 9
AA9
A
269 283Right-handed alpha
Helix 10
AB1
A
283 288Right-handed alpha
Helix 11
AB2
A
329 333Right-handed 310
Helix 12
AB3
A
353 399Right-handed alpha
Helix 13
AB4
A
403 433Right-handed alpha
Helix 14
AB5
A
437 463Right-handed alpha
Helix 15
AB6
A
464 467Right-handed 310
Helix 16
AB7
A
468 491Right-handed alpha
Helix 17
AB8
B
66 85Right-handed alpha
Helix 18
AB9
B
87 98Right-handed alpha
Helix 19
AC1
B
101 112Right-handed alpha
Helix 20
AC2
B
113 120Right-handed alpha
Helix 21
AC3
B
147 149Right-handed 310
Helix 22
AC4
B
162 175Right-handed alpha
Helix 23
AC5
B
193 198Right-handed alpha
Helix 24
AC6
B
199 201Right-handed 310
Helix 25
AC7
B
203 222Right-handed alpha
Helix 26
AC8
B
269 283Right-handed alpha
Helix 27
AC9
B
283 288Right-handed alpha
Helix 28
AD1
B
329 334Right-handed 310
Helix 29
AD2
B
353 399Right-handed alpha
Helix 30
AD3
B
403 434Right-handed alpha
Helix 31
AD4
B
437 463Right-handed alpha
Helix 32
AD5
B
464 467Right-handed 310
Helix 33
AD6
B
468 491Right-handed alpha
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There are 10 sheets in PDB entry 7OD1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
235 239anti-parallel
Strand 3
A
225 227anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
160 161anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 248first strand
Strand 2
A
255 257anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
303 305anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 314first strand
Strand 2
A
321 323anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 65first strand
Strand 2
B
235 239anti-parallel
Strand 3
B
225 227anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 152first strand
Strand 2
B
160 161anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 248first strand
Strand 2
B
255 257anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 296first strand
Strand 2
B
303 305anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
312 314first strand
Strand 2
B
321 323anti-parallel
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