Analysis of interatomic Contacts of Structural Units in PDB entry:
7OD9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OD9 entry

There are 4 chains in PDB entry 7OD9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 HIS 1PRO 129
A
 SER 3VAL 124
C
 SER 259PHE 348
F
 GLY 268PHE 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 7OD9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
13 27Right-handed alpha
Helix 2
AA2
B
38 50Right-handed alpha
Helix 3
AA3
B
64 76Right-handed alpha
Helix 4
AA4
B
89 100Right-handed alpha
Helix 5
AA5
B
110 122Right-handed alpha
Helix 6
AA6
A
13 26Right-handed alpha
Helix 7
AA7
A
38 50Right-handed alpha
Helix 8
AA8
A
64 74Right-handed alpha
Helix 9
AA9
A
89 100Right-handed alpha
Helix 10
AB1
A
110 122Right-handed alpha
Helix 11
AB2
C
260 266Right-handed alpha
Helix 12
AB3
C
267 278Right-handed alpha
Helix 13
AB4
C
279 292Right-handed alpha
Helix 14
AB5
C
298 303Right-handed alpha
Helix 15
AB6
C
305 319Right-handed alpha
Helix 16
AB7
C
334 345Right-handed alpha
Helix 17
AB8
C
346 348Right-handed 310
Helix 18
AB9
F
269 277Right-handed alpha
Helix 19
AC1
F
279 292Right-handed alpha
Helix 20
AC2
F
297 302Right-handed alpha
Helix 21
AC3
F
305 319Right-handed alpha
Helix 22
AC4
F
334 345Right-handed alpha
Helix 23
AC5
F
346 348Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 7OD9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 36first strand
Strand 2
B
5 10parallel
Strand 3
B
53 56parallel
Strand 4
B
80 85parallel
Strand 5
B
103 106parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 36first strand
Strand 2
A
5 10parallel
Strand 3
A
53 56parallel
Strand 4
A
80 85parallel
Strand 5
A
103 106parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
322 333first strand
Strand 2
F
322 333anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il