Analysis of interatomic Contacts of Structural Units in PDB entry:
7ODC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ODC entry

There is 1 chain in PDB entry 7ODC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 7ODC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
20 28Right-handed alpha
Helix 2
H2
A
46 58Right-handed alpha
Helix 3
H3
A
74 82Right-handed alpha
Helix 4
H4
A
92 100Right-handed alpha
Helix 5
H5
A
117 125Right-handed alpha
Helix 6
H6
A
136 145Right-handed alpha
Helix 7
H7
A
174 186Right-handed alpha
Helix 8
H8
A
206 225Right-handed alpha
Helix 9
H9
A
248 262Right-handed alpha
Helix 10
H10
A
277 280Right-handed alpha
Helix 11
H11
A
327 331Right-handed alpha
Helix 12
H12
A
391 393Right-handed alpha
Helix 13
H13
A
412 417Right-handed alpha
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There are 4 sheets in PDB entry 7ODC. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
9 14anti-parallel
Strand 3
A
404 410parallel
Strand 4
A
40 44parallel
Strand 5
A
284 289anti-parallel
Strand 6
A
380 383anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
270 273parallel
Strand 3
A
231 233parallel
Strand 4
A
190 195parallel
Strand 5
A
150 154parallel
Strand 6
A
130 133parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
86 89parallel
Strand 3
A
108 110parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 373first strand
Strand 2
A
350 356anti-parallel
Strand 3
A
313 318parallel
Strand 4
A
290 296anti-parallel
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