Analysis of interatomic Contacts of Structural Units in PDB entry:
7ODE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7ODE entry

There are 18 chains in PDB entry 7ODE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	G 1	U 744
I	G 748	G 954
I	G 956	U 2903
K	ALA 2	PRO 227
L	MET 1	ALA 209
M	MET 1	ALA 201
R	MET 1	ILE 142
S	MET 1	VAL 122
V	MET 1	GLU 120
X	SER 2	ASN 115
Y	ALA 2	ALA 118
Z	MET 1	ALA 103
a	MET 1	ARG 110
b	MET 1	LEU 93
c	ALA 2	ILE 103
g	LYS 2	ALA 63
i	ALA 2	LYS 57
k	MET 1	LYS 46

There are 57 helices in PDB entry 7ODE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	30	32	Right-handed 310
Helix 2	AA2	K	133	135	Right-handed 310
Helix 3	AA3	K	197	203	Right-handed 310
Helix 4	AA4	K	207	213	Right-handed alpha
Helix 5	AA5	K	221	225	Right-handed 310
Helix 6	AA6	L	39	44	Right-handed alpha
Helix 7	AA7	L	56	60	Right-handed 310
Helix 8	AA8	L	61	72	Right-handed alpha
Helix 9	AA9	L	97	102	Right-handed 310
Helix 10	AB1	L	120	126	Right-handed alpha
Helix 11	AB2	M	15	20	Right-handed alpha
Helix 12	AB3	M	24	39	Right-handed alpha
Helix 13	AB4	M	97	115	Right-handed alpha
Helix 14	AB5	M	130	142	Right-handed alpha
Helix 15	AB6	M	154	162	Right-handed alpha
Helix 16	AB7	M	173	175	Right-handed 310
Helix 17	AB8	M	176	183	Right-handed alpha
Helix 18	AB9	M	190	201	Right-handed alpha
Helix 19	AC1	R	24	38	Right-handed alpha
Helix 20	AC2	R	58	62	Right-handed 310
Helix 21	AC3	R	67	72	Right-handed alpha
Helix 22	AC4	R	89	96	Right-handed alpha
Helix 23	AC5	R	96	109	Right-handed alpha
Helix 24	AC6	R	112	121	Right-handed alpha
Helix 25	AC7	R	132	136	Right-handed 310
Helix 26	AC8	S	104	108	Right-handed 310
Helix 27	AC9	S	112	119	Right-handed alpha
Helix 28	AD1	V	13	32	Right-handed alpha
Helix 29	AD2	V	38	57	Right-handed alpha
Helix 30	AD3	V	59	71	Right-handed alpha
Helix 31	AD4	V	72	82	Right-handed alpha
Helix 32	AD5	V	82	87	Right-handed alpha
Helix 33	AD6	X	3	11	Right-handed alpha
Helix 34	AD7	X	53	56	Right-handed 310
Helix 35	AD8	X	97	103	Right-handed 310
Helix 36	AD9	X	104	109	Right-handed 310
Helix 37	AE1	Y	6	21	Right-handed alpha
Helix 38	AE2	Y	26	31	Right-handed alpha
Helix 39	AE3	Y	31	71	Right-handed alpha
Helix 40	AE4	Y	75	86	Right-handed alpha
Helix 41	AE5	Y	91	102	Right-handed alpha
Helix 42	AE6	Y	102	118	Right-handed alpha
Helix 43	AE7	a	13	25	Right-handed alpha
Helix 44	AE8	a	28	38	Right-handed alpha
Helix 45	AE9	a	41	63	Right-handed alpha
Helix 46	AF1	a	89	91	Right-handed 310
Helix 47	AF2	b	3	10	Right-handed alpha
Helix 48	AF3	b	17	28	Right-handed alpha
Helix 49	AF4	b	39	51	Right-handed alpha
Helix 50	AF5	g	3	7	Right-handed alpha
Helix 51	AF6	g	10	34	Right-handed alpha
Helix 52	AF7	g	40	61	Right-handed alpha
Helix 53	AF8	i	9	17	Right-handed alpha
Helix 54	AF9	i	18	20	Right-handed 310
Helix 55	AG1	k	8	17	Right-handed alpha
Helix 56	AG2	k	17	23	Right-handed alpha
Helix 57	AG3	k	24	38	Right-handed alpha

There are 27 sheets in PDB entry 7ODE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	5	first strand
Strand 2	K	17	19	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	34	35	first strand
Strand 2	K	62	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	101	105	first strand
Strand 2	K	91	96	anti-parallel
Strand 3	K	76	82	anti-parallel
Strand 4	K	115	116	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	129	131	first strand
Strand 2	K	189	192	anti-parallel
Strand 3	K	140	142	anti-parallel
Strand 4	K	162	168	anti-parallel
Strand 5	K	171	175	anti-parallel
Strand 6	K	181	185	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	144	145	first strand
Strand 2	K	152	154	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	15	first strand
Strand 2	L	21	28	anti-parallel
Strand 3	L	186	190	anti-parallel
Strand 4	L	169	181	anti-parallel
Strand 5	L	106	112	anti-parallel
Strand 6	L	200	205	anti-parallel
Strand 7	L	4	15	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	80	83	first strand
Strand 2	L	47	51	anti-parallel
Strand 3	L	32	38	anti-parallel
Strand 4	L	95	96	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	119	first strand
Strand 2	L	163	165	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	2	4	first strand
Strand 2	M	11	13	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	118	121	first strand
Strand 2	M	185	189	parallel
Strand 3	M	146	150	parallel
Strand 4	M	167	171	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	122	124	first strand
Strand 2	R	53	57	parallel
Strand 3	R	15	19	parallel
Strand 4	R	138	139	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	73	77	first strand
Strand 2	R	84	88	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	7	10	first strand
Strand 2	S	16	24	anti-parallel
Strand 3	S	38	46	anti-parallel
Strand 4	S	57	64	anti-parallel
Strand 5	S	83	87	anti-parallel
Strand 6	S	7	10	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	69	70	first strand
Strand 2	S	76	79	anti-parallel
Strand 3	X	68	75	anti-parallel
Strand 4	X	58	65	anti-parallel
Strand 5	X	37	51	anti-parallel
Strand 6	X	25	34	anti-parallel
Strand 7	X	81	88	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	33	37	first strand
Strand 2	V	109	115	anti-parallel
Strand 3	V	95	102	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	11	15	first strand
Strand 2	Z	2	6	anti-parallel
Strand 3	Z	38	42	anti-parallel
Strand 4	Z	47	49	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	19	23	first strand
Strand 2	Z	92	102	anti-parallel
Strand 3	Z	58	68	anti-parallel
Strand 4	Z	32	35	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	72	76	first strand
Strand 2	Z	85	89	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	3	10	first strand
Strand 2	a	101	108	anti-parallel
Strand 3	a	70	78	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	82	87	first strand
Strand 2	a	93	98	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	11	14	first strand
Strand 2	b	29	34	anti-parallel
Strand 3	b	80	87	anti-parallel
Strand 4	b	55	63	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	67	70	first strand
Strand 2	b	73	76	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	65	66	first strand
Strand 2	c	33	36	anti-parallel
Strand 3	c	22	29	anti-parallel
Strand 4	c	10	13	anti-parallel
Strand 5	c	70	73	anti-parallel
Strand 6	c	80	81	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	41	44	first strand
Strand 2	c	59	62	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	83	88	first strand
Strand 2	c	91	96	anti-parallel
Strand 3	c	101	102	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	29	30	first strand
Strand 2	i	37	38	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	48	49	first strand
Strand 2	i	52	53	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7ODE

Analysis of interatomic Contacts of Structural Units in PDB entry:
7ODE