Analysis of interatomic Contacts of Structural Units in PDB entry:
7ODF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ODF entry

There are 5 chains in PDB entry 7ODF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 8PRO 729
E
 G 2 C 25
G
 G 1 G 9
C
 G 1 G 2
F
 A 2 U 44
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 7ODF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 14Right-handed alpha
Helix 2
AA2
A
21 35Right-handed alpha
Helix 3
AA3
A
36 47Right-handed alpha
Helix 4
AA4
A
68 71Right-handed 310
Helix 5
AA5
A
72 87Right-handed alpha
Helix 6
AA6
A
89 97Right-handed alpha
Helix 7
AA7
A
101 112Right-handed alpha
Helix 8
AA8
A
121 160Right-handed alpha
Helix 9
AA9
A
234 238Right-handed 310
Helix 10
AB1
A
247 251Right-handed 310
Helix 11
AB2
A
265 270Right-handed 310
Helix 12
AB3
A
305 316Right-handed alpha
Helix 13
AB4
A
333 344Right-handed alpha
Helix 14
AB5
A
351 358Right-handed alpha
Helix 15
AB6
A
390 392Right-handed 310
Helix 16
AB7
A
393 404Right-handed alpha
Helix 17
AB8
A
445 473Right-handed alpha
Helix 18
AB9
A
475 488Right-handed alpha
Helix 19
AC1
A
488 501Right-handed alpha
Helix 20
AC2
A
509 513Right-handed 310
Helix 21
AC3
A
520 528Right-handed alpha
Helix 22
AC4
A
532 536Right-handed alpha
Helix 23
AC5
A
548 556Right-handed alpha
Helix 24
AC6
A
561 579Right-handed alpha
Helix 25
AC7
A
580 608Right-handed alpha
Helix 26
AC8
A
636 641Right-handed 310
Helix 27
AC9
A
649 659Right-handed alpha
Helix 28
AD1
A
659 665Right-handed alpha
Helix 29
AD2
A
687 691Right-handed 310
Helix 30
AD3
A
710 722Right-handed alpha
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There are 4 sheets in PDB entry 7ODF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
364 366anti-parallel
Strand 3
A
371 375anti-parallel
Strand 4
A
57 65anti-parallel
Strand 5
A
327 332anti-parallel
Strand 6
A
319 324anti-parallel
Strand 7
A
202 203anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 442first strand
Strand 2
A
420 427anti-parallel
Strand 3
A
407 414anti-parallel
Strand 4
A
613 618parallel
Strand 5
A
667 671parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 538first strand
Strand 2
A
545 546anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
695 697first strand
Strand 2
A
704 706anti-parallel
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