Analysis of interatomic Contacts of Structural Units in PDB entry:
7ODU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ODU entry

There are 3 chains in PDB entry 7ODU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 74HIS 202
B
 ILE 74SER 195
C
 LYS 93GLU 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 7ODU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
100 111Right-handed alpha
Helix 2
AA2
A
120 131Right-handed alpha
Helix 3
AA3
B
100 111Right-handed alpha
Helix 4
AA4
B
120 131Right-handed alpha
Helix 5
AA5
C
114 124Right-handed alpha
Helix 6
AA6
C
134 145Right-handed alpha
Helix 7
AA7
C
174 178Right-handed 310
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There are 6 sheets in PDB entry 7ODU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
90 94anti-parallel
Strand 3
A
187 193anti-parallel
Strand 4
A
114 115anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
90 94anti-parallel
Strand 3
A
187 193anti-parallel
Strand 4
A
136 141parallel
Strand 5
A
169 173anti-parallel
Strand 6
A
176 180anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 87first strand
Strand 2
B
90 94anti-parallel
Strand 3
B
187 193anti-parallel
Strand 4
B
114 115anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 87first strand
Strand 2
B
90 94anti-parallel
Strand 3
B
187 193anti-parallel
Strand 4
B
136 141parallel
Strand 5
B
169 173anti-parallel
Strand 6
B
176 180anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
99 101first strand
Strand 2
C
104 113anti-parallel
Strand 3
C
206 211anti-parallel
Strand 4
C
128 129anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
165 167first strand
Strand 2
C
151 158anti-parallel
Strand 3
C
188 193anti-parallel
Strand 4
C
197 200anti-parallel
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