Analysis of interatomic Contacts of Structural Units in PDB entry:
7ODX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ODX entry

There is 1 chain in PDB entry 7ODX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 9ARG 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7ODX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 38Right-handed alpha
Helix 2
AA2
A
69 73Right-handed 310
Helix 3
AA3
A
88 98Right-handed alpha
Helix 4
AA4
A
115 124Right-handed alpha
Helix 5
AA5
A
135 146Right-handed alpha
Helix 6
AA6
A
152 157Right-handed alpha
Helix 7
AA7
A
158 166Right-handed 310
Helix 8
AA8
A
170 180Right-handed alpha
Helix 9
AA9
A
191 195Right-handed 310
Helix 10
AB1
A
210 219Right-handed alpha
Helix 11
AB2
A
221 227Right-handed alpha
Helix 12
AB3
A
244 248Right-handed 310
Helix 13
AB4
A
262 267Right-handed 310
Helix 14
AB5
A
286 298Right-handed alpha
Helix 15
AB6
A
312 325Right-handed alpha
Helix 16
AB7
A
337 339Right-handed 310
Helix 17
AB8
A
346 357Right-handed alpha
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There are 4 sheets in PDB entry 7ODX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 169first strand
Strand 2
A
104 108parallel
Strand 3
A
78 81parallel
Strand 4
A
41 44parallel
Strand 5
A
183 187parallel
Strand 6
A
12 18parallel
Strand 7
A
229 235parallel
Strand 8
A
301 305parallel
Strand 9
A
328 333parallel
Strand 10
A
341 343anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
61 64anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
112 113parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
281 283anti-parallel
Strand 3
A
260 261anti-parallel
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