Analysis of interatomic Contacts of Structural Units in PDB entry:
7OE1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OE1 entry

There are 21 chains in PDB entry 7OE1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	U 5	A 1534
D	ALA 1	LYS 205
E	GLU 9	LYS 158
F	MET 1	SER 100
H	SER 1	ALA 129
K	ARG 12	VAL 128
L	ALA 1	ALA 123
O	SER 1	ARG 88
P	MET 1	ALA 82
Q	LYS 3	VAL 82
R	GLU 19	HIS 73
T	ASN 2	ALA 86
B	MET 8	SER 225
U	PHE 36	LYS 53
C	GLY 1	ILE 206
G	ARG 2	ALA 151
I	ASN 3	ARG 129
J	ARG 5	LEU 102
M	ALA 1	PRO 114
N	ALA 1	TRP 100
S	ARG 2	ARG 80

There are 96 helices in PDB entry 7OE1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	8	15	Right-handed alpha
Helix 2	AA2	D	50	65	Right-handed alpha
Helix 3	AA3	D	67	80	Right-handed alpha
Helix 4	AA4	D	84	95	Right-handed alpha
Helix 5	AA5	D	96	104	Right-handed alpha
Helix 6	AA6	D	109	119	Right-handed alpha
Helix 7	AA7	D	146	149	Right-handed 310
Helix 8	AA8	D	153	158	Right-handed alpha
Helix 9	AA9	D	195	204	Right-handed alpha
Helix 10	AB1	E	54	69	Right-handed alpha
Helix 11	AB2	E	108	118	Right-handed alpha
Helix 12	AB3	E	131	145	Right-handed alpha
Helix 13	AB4	E	148	153	Right-handed alpha
Helix 14	AB5	F	11	16	Right-handed 310
Helix 15	AB6	F	17	31	Right-handed alpha
Helix 16	AB7	F	67	81	Right-handed alpha
Helix 17	AB8	H	6	16	Right-handed alpha
Helix 18	AB9	H	30	42	Right-handed alpha
Helix 19	AC1	H	94	98	Right-handed 310
Helix 20	AC2	H	111	118	Right-handed alpha
Helix 21	AC3	K	47	49	Right-handed 310
Helix 22	AC4	K	58	74	Right-handed alpha
Helix 23	AC5	K	89	92	Right-handed 310
Helix 24	AC6	K	93	102	Right-handed alpha
Helix 25	AC7	L	2	9	Right-handed alpha
Helix 26	AC8	L	112	116	Right-handed 310
Helix 27	AC9	O	3	15	Right-handed alpha
Helix 28	AD1	O	23	43	Right-handed alpha
Helix 29	AD2	O	48	73	Right-handed alpha
Helix 30	AD3	O	73	84	Right-handed alpha
Helix 31	AD4	P	53	63	Right-handed alpha
Helix 32	AD5	P	68	82	Right-handed alpha
Helix 33	AD6	R	24	29	Right-handed 310
Helix 34	AD7	R	40	45	Right-handed alpha
Helix 35	AD8	R	49	64	Right-handed alpha
Helix 36	AD9	T	5	31	Right-handed alpha
Helix 37	AE1	T	31	39	Right-handed alpha
Helix 38	AE2	T	42	63	Right-handed alpha
Helix 39	AE3	T	67	84	Right-handed alpha
Helix 40	AE4	B	9	13	Right-handed 310
Helix 41	AE5	B	23	27	Right-handed 310
Helix 42	AE6	B	41	45	Right-handed 310
Helix 43	AE7	B	46	62	Right-handed alpha
Helix 44	AE8	B	74	86	Right-handed alpha
Helix 45	AE9	B	102	127	Right-handed alpha
Helix 46	AF1	B	130	146	Right-handed alpha
Helix 47	AF2	B	165	167	Right-handed 310
Helix 48	AF3	B	168	179	Right-handed alpha
Helix 49	AF4	B	205	221	Right-handed alpha
Helix 50	AF5	U	39	44	Right-handed alpha
Helix 51	AF6	U	46	51	Right-handed alpha
Helix 52	AF7	C	5	10	Right-handed alpha
Helix 53	AF8	C	24	26	Right-handed 310
Helix 54	AF9	C	27	41	Right-handed alpha
Helix 55	AG1	C	43	47	Right-handed 310
Helix 56	AG2	C	71	76	Right-handed alpha
Helix 57	AG3	C	80	94	Right-handed alpha
Helix 58	AG4	C	107	110	Right-handed 310
Helix 59	AG5	C	111	124	Right-handed alpha
Helix 60	AG6	C	130	143	Right-handed alpha
Helix 61	AG7	G	19	30	Right-handed alpha
Helix 62	AG8	G	34	40	Right-handed alpha
Helix 63	AG9	G	42	54	Right-handed alpha
Helix 64	AH1	G	59	63	Right-handed 310
Helix 65	AH2	G	78	82	Right-handed 310
Helix 66	AH3	G	91	96	Right-handed alpha
Helix 67	AH4	G	96	102	Right-handed alpha
Helix 68	AH5	G	114	123	Right-handed alpha
Helix 69	AH6	G	135	144	Right-handed alpha
Helix 70	AH7	I	33	38	Right-handed alpha
Helix 71	AH8	I	48	52	Right-handed 310
Helix 72	AH9	I	56	58	Right-handed 310
Helix 73	AI1	I	72	80	Right-handed alpha
Helix 74	AI2	I	80	86	Right-handed alpha
Helix 75	AI3	I	93	101	Right-handed alpha
Helix 76	AI4	J	14	25	Right-handed alpha
Helix 77	AI5	J	25	30	Right-handed alpha
Helix 78	AI6	J	80	86	Right-handed alpha
Helix 79	AI7	J	87	89	Right-handed 310
Helix 80	AI8	M	13	19	Right-handed alpha
Helix 81	AI9	M	27	37	Right-handed alpha
Helix 82	AJ1	M	43	47	Right-handed 310
Helix 83	AJ2	M	48	62	Right-handed alpha
Helix 84	AJ3	M	64	80	Right-handed alpha
Helix 85	AJ4	M	84	93	Right-handed alpha
Helix 86	AJ5	M	105	110	Right-handed alpha
Helix 87	AJ6	N	2	7	Right-handed alpha
Helix 88	AJ7	N	7	14	Right-handed alpha
Helix 89	AJ8	N	15	20	Right-handed alpha
Helix 90	AJ9	N	23	32	Right-handed alpha
Helix 91	AK1	N	41	46	Right-handed alpha
Helix 92	AK2	N	47	50	Right-handed 310
Helix 93	AK3	N	55	59	Right-handed 310
Helix 94	AK4	N	81	89	Right-handed alpha
Helix 95	AK5	S	11	19	Right-handed alpha
Helix 96	AK6	S	69	74	Right-handed alpha

There are 21 sheets in PDB entry 7OE1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	128	first strand
Strand 2	D	122	124	anti-parallel
Strand 3	D	140	144	anti-parallel
Strand 4	D	178	181	anti-parallel
Strand 5	D	171	173	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	14	first strand
Strand 2	E	35	39	anti-parallel
Strand 3	E	48	49	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	45	first strand
Strand 2	E	71	72	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	87	first strand
Strand 2	E	92	97	anti-parallel
Strand 3	E	122	126	anti-parallel
Strand 4	E	104	105	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	51	first strand
Strand 2	F	54	59	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	27	first strand
Strand 2	H	57	61	anti-parallel
Strand 3	H	47	51	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	75	76	first strand
Strand 2	H	124	128	anti-parallel
Strand 3	H	100	105	anti-parallel
Strand 4	H	108	110	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	42	45	first strand
Strand 2	K	29	34	anti-parallel
Strand 3	K	16	24	anti-parallel
Strand 4	K	78	86	parallel
Strand 5	K	105	111	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	30	first strand
Strand 2	L	80	81	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	35	37	first strand
Strand 2	L	51	55	anti-parallel
Strand 3	L	61	65	anti-parallel
Strand 4	L	94	95	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	6	8	first strand
Strand 2	P	17	23	anti-parallel
Strand 3	P	34	39	anti-parallel
Strand 4	P	50	51	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	6	8	first strand
Strand 2	P	17	23	anti-parallel
Strand 3	P	2	3	anti-parallel
Strand 4	P	65	66	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	7	11	first strand
Strand 2	Q	19	29	anti-parallel
Strand 3	Q	36	46	anti-parallel
Strand 4	Q	70	77	parallel
Strand 5	Q	57	67	anti-parallel
Strand 6	Q	7	11	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	B	38	39	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	159	160	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	21	first strand
Strand 2	C	51	58	parallel
Strand 3	C	66	69	anti-parallel
Strand 4	C	101	104	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	152	first strand
Strand 2	C	194	202	anti-parallel
Strand 3	C	181	189	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	72	73	first strand
Strand 2	G	88	89	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	7	first strand
Strand 2	I	16	22	anti-parallel
Strand 3	I	60	66	anti-parallel
Strand 4	I	27	29	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	45	51	first strand
Strand 2	J	63	69	anti-parallel
Strand 3	N	96	97	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	30	32	first strand
Strand 2	S	48	51	parallel
Strand 3	S	56	57	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OE1

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OE1