Analysis of interatomic Contacts of Structural Units in PDB entry:
7OEB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OEB entry

There are 2 chains in PDB entry 7OEB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	MET 1	GLU 1824
E	U 11	G 16

There are 65 helices in PDB entry 7OEB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	2	16	Right-handed alpha
Helix 2	AA2	L	19	32	Right-handed alpha
Helix 3	AA3	L	34	58	Right-handed alpha
Helix 4	AA4	L	68	76	Right-handed alpha
Helix 5	AA5	L	108	131	Right-handed alpha
Helix 6	AA6	L	132	134	Right-handed 310
Helix 7	AA7	L	153	175	Right-handed alpha
Helix 8	AA8	L	179	191	Right-handed alpha
Helix 9	AA9	L	199	204	Right-handed 310
Helix 10	AB1	L	211	223	Right-handed alpha
Helix 11	AB2	L	230	251	Right-handed alpha
Helix 12	AB3	L	262	272	Right-handed alpha
Helix 13	AB4	L	273	275	Right-handed 310
Helix 14	AB5	L	284	293	Right-handed alpha
Helix 15	AB6	L	296	303	Right-handed alpha
Helix 16	AB7	L	321	336	Right-handed alpha
Helix 17	AB8	L	342	365	Right-handed alpha
Helix 18	AB9	L	385	404	Right-handed alpha
Helix 19	AC1	L	412	435	Right-handed alpha
Helix 20	AC2	L	438	442	Right-handed 310
Helix 21	AC3	L	445	449	Right-handed 310
Helix 22	AC4	L	453	459	Right-handed alpha
Helix 23	AC5	L	491	507	Right-handed alpha
Helix 24	AC6	L	508	510	Right-handed 310
Helix 25	AC7	L	576	580	Right-handed 310
Helix 26	AC8	L	586	601	Right-handed alpha
Helix 27	AC9	L	604	608	Right-handed 310
Helix 28	AD1	L	610	628	Right-handed alpha
Helix 29	AD2	L	630	648	Right-handed alpha
Helix 30	AD3	L	655	661	Right-handed alpha
Helix 31	AD4	L	666	684	Right-handed alpha
Helix 32	AD5	L	691	705	Right-handed alpha
Helix 33	AD6	L	706	708	Right-handed 310
Helix 34	AD7	L	715	735	Right-handed alpha
Helix 35	AD8	L	746	761	Right-handed alpha
Helix 36	AD9	L	780	793	Right-handed alpha
Helix 37	AE1	L	1089	1096	Right-handed alpha
Helix 38	AE2	L	1137	1158	Right-handed alpha
Helix 39	AE3	L	1165	1182	Right-handed alpha
Helix 40	AE4	L	1193	1198	Right-handed alpha
Helix 41	AE5	L	1199	1210	Right-handed alpha
Helix 42	AE6	L	1219	1236	Right-handed alpha
Helix 43	AE7	L	1242	1259	Right-handed alpha
Helix 44	AE8	L	1267	1278	Right-handed alpha
Helix 45	AE9	L	1297	1320	Right-handed alpha
Helix 46	AF1	L	1338	1348	Right-handed alpha
Helix 47	AF2	L	1348	1366	Right-handed alpha
Helix 48	AF3	L	1396	1407	Right-handed alpha
Helix 49	AF4	L	1412	1431	Right-handed alpha
Helix 50	AF5	L	1433	1451	Right-handed alpha
Helix 51	AF6	L	1465	1471	Right-handed alpha
Helix 52	AF7	L	1473	1486	Right-handed alpha
Helix 53	AF8	L	1486	1507	Right-handed alpha
Helix 54	AF9	L	1524	1533	Right-handed alpha
Helix 55	AG1	L	1541	1543	Right-handed 310
Helix 56	AG2	L	1579	1589	Right-handed alpha
Helix 57	AG3	L	1595	1608	Right-handed alpha
Helix 58	AG4	L	1612	1626	Right-handed alpha
Helix 59	AG5	L	1638	1649	Right-handed alpha
Helix 60	AG6	L	1674	1679	Right-handed alpha
Helix 61	AG7	L	1684	1700	Right-handed alpha
Helix 62	AG8	L	1701	1705	Right-handed 310
Helix 63	AG9	L	1778	1790	Right-handed alpha
Helix 64	AH1	L	1795	1800	Right-handed 310
Helix 65	AH2	L	1812	1817	Right-handed alpha

There are 10 sheets in PDB entry 7OEB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	61	62	first strand
Strand 2	L	90	94	anti-parallel
Strand 3	L	97	100	anti-parallel
Strand 4	L	136	139	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	103	105	first strand
Strand 2	L	142	144	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	207	208	first strand
Strand 2	L	1106	1107	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	258	260	first strand
Strand 2	L	651	653	anti-parallel
Strand 3	L	1375	1377	anti-parallel
Strand 4	L	1186	1189	anti-parallel
Strand 5	L	1333	1337	anti-parallel
Strand 6	L	1324	1326	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	374	377	first strand
Strand 2	L	381	384	anti-parallel
Strand 3	L	534	541	anti-parallel
Strand 4	L	544	550	anti-parallel
Strand 5	L	560	564	anti-parallel
Strand 6	L	571	573	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	738	739	first strand
Strand 2	L	1285	1287	anti-parallel
Strand 3	L	1238	1240	anti-parallel
Strand 4	L	1118	1126	parallel
Strand 5	L	1129	1136	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1381	1383	first strand
Strand 2	L	1386	1388	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1653	1656	first strand
Strand 2	L	1662	1665	anti-parallel
Strand 3	L	1545	1548	anti-parallel
Strand 4	L	1681	1683	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1629	1630	first strand
Strand 2	L	1636	1637	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1723	1726	first strand
Strand 2	L	1808	1811	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OEB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OEB