Analysis of interatomic Contacts of Structural Units in PDB entry:
7OFX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OFX entry

There are 4 chains in PDB entry 7OFX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 661
C	HIS 2	THR 662
D	MET 1	ILE 663
B	MET 1	LEU 665

There are 74 helices in PDB entry 7OFX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	144	155	Right-handed alpha
Helix 2	AA2	A	214	227	Right-handed alpha
Helix 3	AA3	A	233	239	Right-handed 310
Helix 4	AA4	A	248	260	Right-handed alpha
Helix 5	AA5	A	270	273	Right-handed 310
Helix 6	AA6	A	297	308	Right-handed alpha
Helix 7	AA7	A	325	334	Right-handed alpha
Helix 8	AA8	A	361	372	Right-handed alpha
Helix 9	AA9	A	404	409	Right-handed alpha
Helix 10	AB1	A	411	427	Right-handed alpha
Helix 11	AB2	A	443	447	Right-handed 310
Helix 12	AB3	A	466	479	Right-handed alpha
Helix 13	AB4	A	500	512	Right-handed alpha
Helix 14	AB5	A	524	528	Right-handed 310
Helix 15	AB6	A	534	551	Right-handed alpha
Helix 16	AB7	A	551	566	Right-handed alpha
Helix 17	AB8	A	572	576	Right-handed 310
Helix 18	AB9	A	580	584	Right-handed 310
Helix 19	AC1	A	653	660	Right-handed alpha
Helix 20	AC2	C	144	155	Right-handed alpha
Helix 21	AC3	C	214	227	Right-handed alpha
Helix 22	AC4	C	233	239	Right-handed 310
Helix 23	AC5	C	248	260	Right-handed alpha
Helix 24	AC6	C	270	273	Right-handed 310
Helix 25	AC7	C	297	308	Right-handed alpha
Helix 26	AC8	C	325	334	Right-handed alpha
Helix 27	AC9	C	361	372	Right-handed alpha
Helix 28	AD1	C	404	409	Right-handed alpha
Helix 29	AD2	C	411	427	Right-handed alpha
Helix 30	AD3	C	443	447	Right-handed 310
Helix 31	AD4	C	466	479	Right-handed alpha
Helix 32	AD5	C	500	512	Right-handed alpha
Helix 33	AD6	C	524	528	Right-handed 310
Helix 34	AD7	C	534	551	Right-handed alpha
Helix 35	AD8	C	551	566	Right-handed alpha
Helix 36	AD9	C	572	576	Right-handed 310
Helix 37	AE1	C	580	584	Right-handed 310
Helix 38	AE2	C	653	661	Right-handed alpha
Helix 39	AE3	D	144	155	Right-handed alpha
Helix 40	AE4	D	214	227	Right-handed alpha
Helix 41	AE5	D	233	239	Right-handed 310
Helix 42	AE6	D	248	260	Right-handed alpha
Helix 43	AE7	D	270	273	Right-handed 310
Helix 44	AE8	D	297	308	Right-handed alpha
Helix 45	AE9	D	325	334	Right-handed alpha
Helix 46	AF1	D	361	372	Right-handed alpha
Helix 47	AF2	D	404	427	Right-handed alpha
Helix 48	AF3	D	443	447	Right-handed 310
Helix 49	AF4	D	466	479	Right-handed alpha
Helix 50	AF5	D	500	512	Right-handed alpha
Helix 51	AF6	D	524	528	Right-handed 310
Helix 52	AF7	D	534	551	Right-handed alpha
Helix 53	AF8	D	551	566	Right-handed alpha
Helix 54	AF9	D	572	576	Right-handed 310
Helix 55	AG1	D	580	584	Right-handed 310
Helix 56	AG2	D	653	661	Right-handed alpha
Helix 57	AG3	B	144	155	Right-handed alpha
Helix 58	AG4	B	214	227	Right-handed alpha
Helix 59	AG5	B	233	239	Right-handed 310
Helix 60	AG6	B	248	260	Right-handed alpha
Helix 61	AG7	B	270	273	Right-handed 310
Helix 62	AG8	B	297	308	Right-handed alpha
Helix 63	AG9	B	325	334	Right-handed alpha
Helix 64	AH1	B	361	372	Right-handed alpha
Helix 65	AH2	B	404	427	Right-handed alpha
Helix 66	AH3	B	443	447	Right-handed 310
Helix 67	AH4	B	466	479	Right-handed alpha
Helix 68	AH5	B	500	512	Right-handed alpha
Helix 69	AH6	B	524	528	Right-handed 310
Helix 70	AH7	B	534	551	Right-handed alpha
Helix 71	AH8	B	551	566	Right-handed alpha
Helix 72	AH9	B	572	576	Right-handed 310
Helix 73	AI1	B	580	584	Right-handed 310
Helix 74	AI2	B	653	665	Right-handed alpha

There are 40 sheets in PDB entry 7OFX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	5	first strand
Strand 2	A	10	14	anti-parallel
Strand 3	A	17	22	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	56	first strand
Strand 2	A	29	41	anti-parallel
Strand 3	A	99	105	anti-parallel
Strand 4	A	195	200	anti-parallel
Strand 5	A	186	189	anti-parallel
Strand 6	A	128	131	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	63	first strand
Strand 2	A	66	70	anti-parallel
Strand 3	A	79	84	anti-parallel
Strand 4	A	87	92	anti-parallel
Strand 5	A	206	211	anti-parallel
Strand 6	A	176	181	anti-parallel
Strand 7	A	166	172	anti-parallel
Strand 8	A	112	116	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	243	first strand
Strand 2	A	264	268	parallel
Strand 3	A	311	316	parallel
Strand 4	A	384	387	parallel
Strand 5	A	434	436	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	277	first strand
Strand 2	A	282	284	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	321	first strand
Strand 2	A	353	356	anti-parallel
Strand 3	A	346	348	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	452	first strand
Strand 2	A	484	485	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	488	first strand
Strand 2	A	518	519	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	570	571	first strand
Strand 2	A	590	592	anti-parallel
Strand 3	A	596	599	anti-parallel
Strand 4	A	644	648	anti-parallel
Strand 5	A	618	621	anti-parallel
Strand 6	A	627	629	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	608	613	first strand
Strand 2	A	632	637	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	10	14	anti-parallel
Strand 3	C	17	22	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	56	first strand
Strand 2	C	29	41	anti-parallel
Strand 3	C	99	105	anti-parallel
Strand 4	C	195	200	anti-parallel
Strand 5	C	186	189	anti-parallel
Strand 6	C	128	131	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	63	first strand
Strand 2	C	66	70	anti-parallel
Strand 3	C	79	84	anti-parallel
Strand 4	C	87	92	anti-parallel
Strand 5	C	206	211	anti-parallel
Strand 6	C	176	181	anti-parallel
Strand 7	C	166	172	anti-parallel
Strand 8	C	112	116	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	243	first strand
Strand 2	C	264	268	parallel
Strand 3	C	311	316	parallel
Strand 4	C	384	387	parallel
Strand 5	C	434	437	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	277	first strand
Strand 2	C	282	284	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	319	321	first strand
Strand 2	C	353	356	anti-parallel
Strand 3	C	346	348	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	452	first strand
Strand 2	C	484	485	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	487	488	first strand
Strand 2	C	518	519	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	570	571	first strand
Strand 2	C	590	592	anti-parallel
Strand 3	C	596	599	anti-parallel
Strand 4	C	644	648	anti-parallel
Strand 5	C	618	621	anti-parallel
Strand 6	C	627	629	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	608	613	first strand
Strand 2	C	632	637	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	5	first strand
Strand 2	D	10	14	anti-parallel
Strand 3	D	17	22	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	56	first strand
Strand 2	D	29	41	anti-parallel
Strand 3	D	99	105	anti-parallel
Strand 4	D	195	200	anti-parallel
Strand 5	D	186	189	anti-parallel
Strand 6	D	128	131	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	63	first strand
Strand 2	D	66	70	anti-parallel
Strand 3	D	79	84	anti-parallel
Strand 4	D	87	92	anti-parallel
Strand 5	D	206	211	anti-parallel
Strand 6	D	176	181	anti-parallel
Strand 7	D	166	172	anti-parallel
Strand 8	D	112	116	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	243	first strand
Strand 2	D	264	268	parallel
Strand 3	D	311	316	parallel
Strand 4	D	384	387	parallel
Strand 5	D	434	436	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	277	first strand
Strand 2	D	282	284	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	319	321	first strand
Strand 2	D	353	356	anti-parallel
Strand 3	D	346	348	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	451	452	first strand
Strand 2	D	484	485	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	487	488	first strand
Strand 2	D	518	519	parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	570	571	first strand
Strand 2	D	590	592	anti-parallel
Strand 3	D	596	599	anti-parallel
Strand 4	D	644	648	anti-parallel
Strand 5	D	618	621	anti-parallel
Strand 6	D	627	629	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	608	613	first strand
Strand 2	D	632	637	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	10	14	anti-parallel
Strand 3	B	17	22	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	56	first strand
Strand 2	B	29	41	anti-parallel
Strand 3	B	99	105	anti-parallel
Strand 4	B	195	200	anti-parallel
Strand 5	B	186	189	anti-parallel
Strand 6	B	128	131	anti-parallel

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There are 8 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	63	first strand
Strand 2	B	66	70	anti-parallel
Strand 3	B	79	84	anti-parallel
Strand 4	B	87	92	anti-parallel
Strand 5	B	206	211	anti-parallel
Strand 6	B	176	181	anti-parallel
Strand 7	B	166	172	anti-parallel
Strand 8	B	112	116	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	264	268	parallel
Strand 3	B	311	316	parallel
Strand 4	B	384	387	parallel
Strand 5	B	434	436	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	277	first strand
Strand 2	B	282	284	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	321	first strand
Strand 2	B	353	356	anti-parallel
Strand 3	B	346	348	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	452	first strand
Strand 2	B	484	485	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	487	488	first strand
Strand 2	B	518	519	parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	570	571	first strand
Strand 2	B	590	592	anti-parallel
Strand 3	B	596	599	anti-parallel
Strand 4	B	644	648	anti-parallel
Strand 5	B	618	621	anti-parallel
Strand 6	B	627	629	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	608	613	first strand
Strand 2	B	632	637	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OFX

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OFX