Analysis of interatomic Contacts of Structural Units in PDB entry:
7OGG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OGG entry

There are 2 chains in PDB entry 7OGG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
 ASP 2UNK 608
Q
 SER 102UNK 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 7OGG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
R
3 8Right-handed alpha
Helix 2
AA2
R
25 41Right-handed alpha
Helix 3
AA3
R
43 54Right-handed alpha
Helix 4
AA4
R
65 76Right-handed alpha
Helix 5
AA5
R
79 91Right-handed alpha
Helix 6
AA6
R
99 117Right-handed alpha
Helix 7
AA7
R
124 140Right-handed alpha
Helix 8
AA8
R
190 195Right-handed alpha
Helix 9
AA9
R
203 209Right-handed alpha
Helix 10
AB1
R
212 226Right-handed alpha
Helix 11
AB2
R
229 238Right-handed alpha
Helix 12
AB3
R
239 262Right-handed alpha
Helix 13
AB4
R
270 277Right-handed alpha
Helix 14
AB5
R
279 288Right-handed alpha
Helix 15
AB6
R
339 363Right-handed alpha
Helix 16
AB7
R
379 391Right-handed alpha
Helix 17
AB8
R
394 403Right-handed alpha
Helix 18
AB9
R
406 410Right-handed 310
Helix 19
AC1
R
492 517Right-handed alpha
Helix 20
AC2
R
559 570Right-handed alpha
Helix 21
AC3
R
579 587Right-handed alpha
Helix 22
AC4
R
588 596Right-handed alpha
Helix 23
AC5
R
601 606Right-handed alpha
Helix 24
AC6
Q
112 122Right-handed alpha
Helix 25
AC7
Q
131 146Right-handed alpha
Helix 26
AC8
Q
146 153Right-handed alpha
Helix 27
AC9
Q
158 166Right-handed alpha
Helix 28
AD1
Q
168 180Right-handed alpha
Helix 29
AD2
Q
184 195Right-handed alpha
Helix 30
AD3
Q
198 208Right-handed alpha
Helix 31
AD4
Q
216 231Right-handed alpha
Helix 32
AD5
Q
234 243Right-handed alpha
Helix 33
AD6
Q
256 270Right-handed alpha
Helix 34
AD7
Q
276 292Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 7OGG.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
309 310first strand
Strand 2
R
317 318anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il