Analysis of interatomic Contacts of Structural Units in PDB entry:
7OGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OGJ entry

There are 2 chains in PDB entry 7OGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 6VAL 233
B
 VAL 9LEU 234
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 7OGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 14Right-handed 310
Helix 2
AA2
A
58 65Right-handed alpha
Helix 3
AA3
A
79 96Right-handed alpha
Helix 4
AA4
A
114 119Right-handed alpha
Helix 5
AA5
A
135 139Right-handed 310
Helix 6
AA6
A
140 144Right-handed 310
Helix 7
AA7
A
147 157Right-handed alpha
Helix 8
AA8
A
170 183Right-handed alpha
Helix 9
AA9
A
191 196Right-handed 310
Helix 10
AB1
A
200 204Right-handed 310
Helix 11
AB2
A
208 218Right-handed alpha
Helix 12
AB3
B
10 14Right-handed 310
Helix 13
AB4
B
15 20Right-handed alpha
Helix 14
AB5
B
21 24Right-handed 310
Helix 15
AB6
B
58 68Right-handed alpha
Helix 16
AB7
B
79 96Right-handed alpha
Helix 17
AB8
B
114 119Right-handed alpha
Helix 18
AB9
B
147 157Right-handed alpha
Helix 19
AC1
B
170 184Right-handed alpha
Helix 20
AC2
B
191 196Right-handed 310
Helix 21
AC3
B
200 204Right-handed 310
Helix 22
AC4
B
208 217Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 7OGJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 108first strand
Strand 2
A
72 77parallel
Strand 3
A
48 53parallel
Strand 4
A
124 130parallel
Strand 5
A
158 167parallel
Strand 6
A
224 228anti-parallel
Strand 7
A
187 190anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 108first strand
Strand 2
B
72 77parallel
Strand 3
B
48 53parallel
Strand 4
B
124 130parallel
Strand 5
B
158 168parallel
Strand 6
B
222 228anti-parallel
Strand 7
B
187 190anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il