Analysis of interatomic Contacts of Structural Units in PDB entry:
7OGK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OGK entry

There are 4 chains in PDB entry 7OGK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 695
B	MET 1	GLN 695
C	MET 1	GLN 695
D	A 1	A 8

There are 60 helices in PDB entry 7OGK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	71	Right-handed 310
Helix 2	AA2	A	85	100	Right-handed alpha
Helix 3	AA3	A	101	103	Right-handed 310
Helix 4	AA4	A	125	141	Right-handed alpha
Helix 5	AA5	A	197	212	Right-handed alpha
Helix 6	AA6	A	212	224	Right-handed alpha
Helix 7	AA7	A	239	258	Right-handed alpha
Helix 8	AA8	A	262	285	Right-handed alpha
Helix 9	AA9	A	289	310	Right-handed alpha
Helix 10	AB1	A	358	362	Right-handed 310
Helix 11	AB2	A	383	388	Right-handed 310
Helix 12	AB3	A	397	413	Right-handed alpha
Helix 13	AB4	A	437	454	Right-handed alpha
Helix 14	AB5	A	483	489	Right-handed 310
Helix 15	AB6	A	515	541	Right-handed alpha
Helix 16	AB7	A	564	570	Right-handed alpha
Helix 17	AB8	A	573	584	Right-handed alpha
Helix 18	AB9	A	601	616	Right-handed alpha
Helix 19	AC1	A	652	654	Right-handed 310
Helix 20	AC2	B	85	103	Right-handed alpha
Helix 21	AC3	B	125	141	Right-handed alpha
Helix 22	AC4	B	166	171	Right-handed alpha
Helix 23	AC5	B	197	212	Right-handed alpha
Helix 24	AC6	B	212	227	Right-handed alpha
Helix 25	AC7	B	239	249	Right-handed alpha
Helix 26	AC8	B	251	256	Right-handed alpha
Helix 27	AC9	B	262	282	Right-handed alpha
Helix 28	AD1	B	289	312	Right-handed alpha
Helix 29	AD2	B	360	362	Right-handed 310
Helix 30	AD3	B	383	388	Right-handed 310
Helix 31	AD4	B	397	413	Right-handed alpha
Helix 32	AD5	B	417	421	Right-handed 310
Helix 33	AD6	B	437	454	Right-handed alpha
Helix 34	AD7	B	483	487	Right-handed 310
Helix 35	AD8	B	515	541	Right-handed alpha
Helix 36	AD9	B	561	570	Right-handed alpha
Helix 37	AE1	B	575	584	Right-handed alpha
Helix 38	AE2	B	601	617	Right-handed alpha
Helix 39	AE3	B	662	666	Right-handed 310
Helix 40	AE4	C	67	71	Right-handed 310
Helix 41	AE5	C	85	100	Right-handed alpha
Helix 42	AE6	C	101	103	Right-handed 310
Helix 43	AE7	C	126	141	Right-handed alpha
Helix 44	AE8	C	157	160	Right-handed 310
Helix 45	AE9	C	168	173	Right-handed 310
Helix 46	AF1	C	197	212	Right-handed alpha
Helix 47	AF2	C	212	227	Right-handed alpha
Helix 48	AF3	C	239	260	Right-handed alpha
Helix 49	AF4	C	264	280	Right-handed alpha
Helix 50	AF5	C	289	312	Right-handed alpha
Helix 51	AF6	C	358	362	Right-handed 310
Helix 52	AF7	C	383	388	Right-handed 310
Helix 53	AF8	C	397	413	Right-handed alpha
Helix 54	AF9	C	437	453	Right-handed alpha
Helix 55	AG1	C	482	486	Right-handed 310
Helix 56	AG2	C	515	541	Right-handed alpha
Helix 57	AG3	C	561	569	Right-handed alpha
Helix 58	AG4	C	570	573	Right-handed 310
Helix 59	AG5	C	574	584	Right-handed alpha
Helix 60	AG6	C	603	616	Right-handed alpha

There are 21 sheets in PDB entry 7OGK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	11	first strand
Strand 2	A	14	20	anti-parallel
Strand 3	A	29	35	anti-parallel
Strand 4	A	38	46	anti-parallel
Strand 5	A	111	119	anti-parallel
Strand 6	A	59	65	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	163	first strand
Strand 2	A	152	157	anti-parallel
Strand 3	A	177	181	anti-parallel
Strand 4	A	186	196	anti-parallel
Strand 5	A	501	509	anti-parallel
Strand 6	A	491	498	anti-parallel
Strand 7	A	462	471	anti-parallel
Strand 8	A	474	478	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	331	first strand
Strand 2	A	339	345	anti-parallel
Strand 3	A	349	357	anti-parallel
Strand 4	A	424	433	anti-parallel
Strand 5	A	376	381	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	365	first strand
Strand 2	A	372	374	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	559	first strand
Strand 2	A	594	598	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	647	650	first strand
Strand 2	A	636	639	anti-parallel
Strand 3	A	624	633	anti-parallel
Strand 4	A	671	679	anti-parallel
Strand 5	A	685	688	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	11	first strand
Strand 2	B	14	20	anti-parallel
Strand 3	B	29	35	anti-parallel
Strand 4	B	38	46	anti-parallel
Strand 5	B	111	119	anti-parallel
Strand 6	B	59	65	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	163	first strand
Strand 2	B	150	157	anti-parallel
Strand 3	B	177	181	anti-parallel
Strand 4	B	186	196	anti-parallel
Strand 5	B	502	509	anti-parallel
Strand 6	B	491	497	anti-parallel
Strand 7	B	462	470	anti-parallel
Strand 8	B	475	479	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	331	first strand
Strand 2	B	339	345	anti-parallel
Strand 3	B	348	358	anti-parallel
Strand 4	B	423	433	anti-parallel
Strand 5	B	376	381	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	366	first strand
Strand 2	B	371	374	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	554	559	first strand
Strand 2	B	594	599	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	629	633	first strand
Strand 2	B	636	639	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	675	676	first strand
Strand 2	B	687	688	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	11	first strand
Strand 2	C	14	20	anti-parallel
Strand 3	C	29	35	anti-parallel
Strand 4	C	38	46	anti-parallel
Strand 5	C	111	119	anti-parallel
Strand 6	C	59	65	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	163	first strand
Strand 2	C	152	155	anti-parallel
Strand 3	C	175	181	anti-parallel
Strand 4	C	186	193	anti-parallel
Strand 5	C	502	509	anti-parallel
Strand 6	C	491	498	anti-parallel
Strand 7	C	461	462	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	163	first strand
Strand 2	C	152	155	anti-parallel
Strand 3	C	175	181	anti-parallel
Strand 4	C	186	193	anti-parallel
Strand 5	C	502	509	anti-parallel
Strand 6	C	491	498	anti-parallel
Strand 7	C	465	469	anti-parallel
Strand 8	C	476	479	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	331	first strand
Strand 2	C	339	344	anti-parallel
Strand 3	C	348	357	anti-parallel
Strand 4	C	424	434	anti-parallel
Strand 5	C	376	381	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	365	first strand
Strand 2	C	372	374	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	554	559	first strand
Strand 2	C	594	599	anti-parallel
Strand 3	C	586	587	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	638	640	first strand
Strand 2	C	625	631	anti-parallel
Strand 3	C	671	675	anti-parallel
Strand 4	C	688	689	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	680	681	first strand
Strand 2	C	684	685	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OGK

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OGK