Analysis of interatomic Contacts of Structural Units in PDB entry:
7OGM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OGM entry

There are 10 chains in PDB entry 7OGM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	LEU 7	VAL 68
J	SER 6	VAL 68
I	SER 6	VAL 68
D	ASP 9	ALA 75
E	GLN 8	VAL 68
F	GLN 8	VAL 68
L	MET 1	THR 693
N	MET 1	ILE 689
O	MET 1	GLN 695
P	A 1	U 50

There are 67 helices in PDB entry 7OGM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	7	18	Right-handed alpha
Helix 2	AA2	J	7	18	Right-handed alpha
Helix 3	AA3	I	7	19	Right-handed alpha
Helix 4	AA4	D	10	19	Right-handed alpha
Helix 5	AA5	E	9	19	Right-handed alpha
Helix 6	AA6	F	10	18	Right-handed alpha
Helix 7	AA7	L	67	71	Right-handed 310
Helix 8	AA8	L	85	103	Right-handed alpha
Helix 9	AA9	L	125	141	Right-handed alpha
Helix 10	AB1	L	166	172	Right-handed alpha
Helix 11	AB2	L	197	212	Right-handed alpha
Helix 12	AB3	L	212	227	Right-handed alpha
Helix 13	AB4	L	240	258	Right-handed alpha
Helix 14	AB5	L	262	280	Right-handed alpha
Helix 15	AB6	L	289	312	Right-handed alpha
Helix 16	AB7	L	383	388	Right-handed 310
Helix 17	AB8	L	397	413	Right-handed alpha
Helix 18	AB9	L	440	454	Right-handed alpha
Helix 19	AC1	L	485	489	Right-handed 310
Helix 20	AC2	L	515	530	Right-handed alpha
Helix 21	AC3	L	561	563	Right-handed 310
Helix 22	AC4	L	564	570	Right-handed alpha
Helix 23	AC5	L	573	584	Right-handed alpha
Helix 24	AC6	L	601	614	Right-handed alpha
Helix 25	AC7	L	650	655	Right-handed alpha
Helix 26	AC8	L	661	666	Right-handed 310
Helix 27	AC9	L	691	693	Right-handed 310
Helix 28	AD1	N	67	71	Right-handed 310
Helix 29	AD2	N	85	103	Right-handed alpha
Helix 30	AD3	N	125	141	Right-handed alpha
Helix 31	AD4	N	166	171	Right-handed alpha
Helix 32	AD5	N	197	212	Right-handed alpha
Helix 33	AD6	N	212	227	Right-handed alpha
Helix 34	AD7	N	242	258	Right-handed alpha
Helix 35	AD8	N	262	281	Right-handed alpha
Helix 36	AD9	N	290	312	Right-handed alpha
Helix 37	AE1	N	383	388	Right-handed 310
Helix 38	AE2	N	397	413	Right-handed alpha
Helix 39	AE3	N	437	454	Right-handed alpha
Helix 40	AE4	N	483	489	Right-handed 310
Helix 41	AE5	N	515	541	Right-handed alpha
Helix 42	AE6	N	561	563	Right-handed 310
Helix 43	AE7	N	564	570	Right-handed alpha
Helix 44	AE8	N	573	584	Right-handed alpha
Helix 45	AE9	N	601	614	Right-handed alpha
Helix 46	AF1	N	651	655	Right-handed alpha
Helix 47	AF2	N	661	665	Right-handed 310
Helix 48	AF3	O	67	71	Right-handed 310
Helix 49	AF4	O	85	100	Right-handed alpha
Helix 50	AF5	O	101	103	Right-handed 310
Helix 51	AF6	O	125	141	Right-handed alpha
Helix 52	AF7	O	166	172	Right-handed alpha
Helix 53	AF8	O	197	211	Right-handed alpha
Helix 54	AF9	O	212	227	Right-handed alpha
Helix 55	AG1	O	240	249	Right-handed alpha
Helix 56	AG2	O	250	260	Right-handed alpha
Helix 57	AG3	O	262	281	Right-handed alpha
Helix 58	AG4	O	292	312	Right-handed alpha
Helix 59	AG5	O	358	362	Right-handed 310
Helix 60	AG6	O	383	388	Right-handed 310
Helix 61	AG7	O	397	413	Right-handed alpha
Helix 62	AG8	O	438	453	Right-handed alpha
Helix 63	AG9	O	485	489	Right-handed 310
Helix 64	AH1	O	515	541	Right-handed alpha
Helix 65	AH2	O	561	570	Right-handed alpha
Helix 66	AH3	O	573	584	Right-handed alpha
Helix 67	AH4	O	601	617	Right-handed alpha

There are 25 sheets in PDB entry 7OGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	31	34	first strand
Strand 2	K	22	26	anti-parallel
Strand 3	K	59	64	anti-parallel
Strand 4	J	53	55	anti-parallel
Strand 5	J	43	46	anti-parallel
Strand 6	J	30	39	anti-parallel
Strand 7	J	21	26	anti-parallel
Strand 8	J	59	64	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	36	39	first strand
Strand 2	K	43	46	anti-parallel
Strand 3	K	52	55	anti-parallel
Strand 4	F	59	64	anti-parallel
Strand 5	F	22	26	anti-parallel
Strand 6	F	31	34	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	51	55	first strand
Strand 2	I	43	47	anti-parallel
Strand 3	I	31	40	anti-parallel
Strand 4	I	21	26	anti-parallel
Strand 5	I	59	64	anti-parallel
Strand 6	D	52	55	anti-parallel
Strand 7	D	43	46	anti-parallel
Strand 8	D	36	40	anti-parallel

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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	34	first strand
Strand 2	D	22	26	anti-parallel
Strand 3	D	59	64	anti-parallel
Strand 4	E	52	55	anti-parallel
Strand 5	E	43	47	anti-parallel
Strand 6	E	31	40	anti-parallel
Strand 7	E	22	26	anti-parallel
Strand 8	E	59	64	anti-parallel
Strand 9	F	52	55	anti-parallel
Strand 10	F	43	46	anti-parallel
Strand 11	F	36	39	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	10	first strand
Strand 2	L	15	20	anti-parallel
Strand 3	L	29	35	anti-parallel
Strand 4	L	38	46	anti-parallel
Strand 5	L	111	119	anti-parallel
Strand 6	L	60	65	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	150	154	first strand
Strand 2	L	175	181	anti-parallel
Strand 3	L	186	196	anti-parallel
Strand 4	L	502	507	anti-parallel
Strand 5	L	491	498	anti-parallel
Strand 6	L	461	471	anti-parallel
Strand 7	L	474	478	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	327	328	first strand
Strand 2	L	343	345	anti-parallel
Strand 3	L	348	350	anti-parallel
Strand 4	L	424	433	anti-parallel
Strand 5	L	353	357	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	327	328	first strand
Strand 2	L	343	345	anti-parallel
Strand 3	L	348	350	anti-parallel
Strand 4	L	424	433	anti-parallel
Strand 5	L	376	381	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	363	367	first strand
Strand 2	L	370	374	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	554	558	first strand
Strand 2	L	595	599	anti-parallel
Strand 3	L	586	589	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	625	628	first strand
Strand 2	L	671	678	anti-parallel
Strand 3	L	686	689	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	632	633	first strand
Strand 2	L	636	640	anti-parallel
Strand 3	L	646	649	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	17	20	first strand
Strand 2	N	29	34	anti-parallel
Strand 3	N	39	46	anti-parallel
Strand 4	N	111	119	anti-parallel
Strand 5	N	59	65	parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	160	163	first strand
Strand 2	N	152	157	anti-parallel
Strand 3	N	176	181	anti-parallel
Strand 4	N	186	196	anti-parallel
Strand 5	N	502	509	anti-parallel
Strand 6	N	491	497	anti-parallel
Strand 7	N	462	471	anti-parallel
Strand 8	N	474	479	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	329	331	first strand
Strand 2	N	339	345	anti-parallel
Strand 3	N	348	357	anti-parallel
Strand 4	N	424	433	anti-parallel
Strand 5	N	376	381	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	363	366	first strand
Strand 2	N	371	374	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	554	559	first strand
Strand 2	N	594	599	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	629	633	first strand
Strand 2	N	636	639	anti-parallel
Strand 3	N	648	650	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	10	11	first strand
Strand 2	O	14	20	anti-parallel
Strand 3	O	29	35	anti-parallel
Strand 4	O	38	46	anti-parallel
Strand 5	O	111	119	anti-parallel
Strand 6	O	59	65	parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	160	163	first strand
Strand 2	O	150	157	anti-parallel
Strand 3	O	177	181	anti-parallel
Strand 4	O	188	196	anti-parallel
Strand 5	O	502	509	anti-parallel
Strand 6	O	491	497	anti-parallel
Strand 7	O	462	471	anti-parallel
Strand 8	O	474	478	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	327	331	first strand
Strand 2	O	339	345	anti-parallel
Strand 3	O	349	350	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	327	331	first strand
Strand 2	O	339	345	anti-parallel
Strand 3	O	353	357	anti-parallel
Strand 4	O	424	430	anti-parallel
Strand 5	O	376	381	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	554	559	first strand
Strand 2	O	594	599	anti-parallel
Strand 3	O	586	588	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	637	639	first strand
Strand 2	O	647	649	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	674	675	first strand
Strand 2	O	688	689	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OGM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OGM