Analysis of interatomic Contacts of Structural Units in PDB entry:
7OGP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OGP entry

There are 5 chains in PDB entry 7OGP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 7	LYS 486
B	HIS 304	GLN 521
C	SER 2	PRO 698
D	MET 1	ARG 677
E	PRO 2	LYS 543

There are 90 helices in PDB entry 7OGP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	14	Right-handed alpha
Helix 2	AA2	A	151	156	Right-handed alpha
Helix 3	AA3	A	186	194	Right-handed alpha
Helix 4	AA4	A	207	211	Right-handed 310
Helix 5	AA5	A	248	273	Right-handed alpha
Helix 6	AA6	A	313	321	Right-handed alpha
Helix 7	AA7	A	322	333	Right-handed alpha
Helix 8	AA8	A	336	347	Right-handed alpha
Helix 9	AA9	A	352	365	Right-handed alpha
Helix 10	AB1	A	383	385	Right-handed 310
Helix 11	AB2	A	408	412	Right-handed 310
Helix 12	AB3	A	430	437	Right-handed alpha
Helix 13	AB4	A	438	440	Right-handed 310
Helix 14	AB5	A	456	460	Right-handed 310
Helix 15	AB6	A	462	474	Right-handed alpha
Helix 16	AB7	A	480	485	Right-handed alpha
Helix 17	AB8	B	313	322	Right-handed alpha
Helix 18	AB9	B	324	331	Right-handed alpha
Helix 19	AC1	B	337	346	Right-handed alpha
Helix 20	AC2	B	347	354	Right-handed 310
Helix 21	AC3	B	357	367	Right-handed alpha
Helix 22	AC4	B	374	380	Right-handed 310
Helix 23	AC5	B	381	399	Right-handed alpha
Helix 24	AC6	B	404	408	Right-handed 310
Helix 25	AC7	B	434	442	Right-handed alpha
Helix 26	AC8	B	460	474	Right-handed alpha
Helix 27	AC9	B	483	490	Right-handed alpha
Helix 28	AD1	B	504	521	Right-handed alpha
Helix 29	AD2	C	16	20	Right-handed 310
Helix 30	AD3	C	27	38	Right-handed alpha
Helix 31	AD4	C	56	61	Right-handed alpha
Helix 32	AD5	C	133	139	Right-handed alpha
Helix 33	AD6	C	189	193	Right-handed alpha
Helix 34	AD7	C	249	254	Right-handed alpha
Helix 35	AD8	C	299	327	Right-handed alpha
Helix 36	AD9	C	336	348	Right-handed alpha
Helix 37	AE1	C	422	428	Right-handed alpha
Helix 38	AE2	C	430	453	Right-handed alpha
Helix 39	AE3	C	462	470	Right-handed alpha
Helix 40	AE4	C	472	491	Right-handed alpha
Helix 41	AE5	C	491	498	Right-handed alpha
Helix 42	AE6	C	504	515	Right-handed alpha
Helix 43	AE7	C	528	538	Right-handed alpha
Helix 44	AE8	C	618	628	Right-handed alpha
Helix 45	AE9	C	632	643	Right-handed alpha
Helix 46	AF1	C	643	657	Right-handed alpha
Helix 47	AF2	C	677	689	Right-handed alpha
Helix 48	AF3	D	7	13	Right-handed alpha
Helix 49	AF4	D	15	21	Right-handed alpha
Helix 50	AF5	D	41	50	Right-handed alpha
Helix 51	AF6	D	51	55	Right-handed 310
Helix 52	AF7	D	63	67	Right-handed 310
Helix 53	AF8	D	77	81	Right-handed 310
Helix 54	AF9	D	90	107	Right-handed alpha
Helix 55	AG1	D	114	136	Right-handed alpha
Helix 56	AG2	D	145	154	Right-handed alpha
Helix 57	AG3	D	155	161	Right-handed alpha
Helix 58	AG4	D	168	174	Right-handed alpha
Helix 59	AG5	D	175	185	Right-handed alpha
Helix 60	AG6	D	193	201	Right-handed alpha
Helix 61	AG7	D	241	250	Right-handed alpha
Helix 62	AG8	D	259	278	Right-handed alpha
Helix 63	AG9	D	350	355	Right-handed alpha
Helix 64	AH1	D	357	361	Right-handed 310
Helix 65	AH2	D	366	384	Right-handed alpha
Helix 66	AH3	D	553	566	Right-handed alpha
Helix 67	AH4	D	579	588	Right-handed alpha
Helix 68	AH5	D	594	604	Right-handed alpha
Helix 69	AH6	D	609	613	Right-handed 310
Helix 70	AH7	D	628	635	Right-handed alpha
Helix 71	AH8	D	637	642	Right-handed alpha
Helix 72	AH9	D	653	657	Right-handed 310
Helix 73	AI1	D	667	672	Right-handed alpha
Helix 74	AI2	E	3	13	Right-handed alpha
Helix 75	AI3	E	18	23	Right-handed alpha
Helix 76	AI4	E	24	30	Right-handed alpha
Helix 77	AI5	E	40	51	Right-handed alpha
Helix 78	AI6	E	52	57	Right-handed 310
Helix 79	AI7	E	70	79	Right-handed alpha
Helix 80	AI8	E	322	325	Right-handed 310
Helix 81	AI9	E	326	338	Right-handed alpha
Helix 82	AJ1	E	341	348	Right-handed alpha
Helix 83	AJ2	E	356	367	Right-handed alpha
Helix 84	AJ3	E	368	372	Right-handed 310
Helix 85	AJ4	E	389	394	Right-handed alpha
Helix 86	AJ5	E	394	410	Right-handed alpha
Helix 87	AJ6	E	417	429	Right-handed alpha
Helix 88	AJ7	E	490	495	Right-handed alpha
Helix 89	AJ8	E	518	522	Right-handed 310
Helix 90	AJ9	E	529	538	Right-handed alpha

There are 19 sheets in PDB entry 7OGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	312	first strand
Strand 2	A	387	395	parallel
Strand 3	A	372	377	anti-parallel
Strand 4	A	423	427	anti-parallel
Strand 5	A	293	296	anti-parallel
Strand 6	C	583	585	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	300	first strand
Strand 2	A	404	406	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	412	first strand
Strand 2	B	478	480	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	519	520	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	68	first strand
Strand 2	C	151	152	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	116	first strand
Strand 2	C	97	103	anti-parallel
Strand 3	C	73	80	anti-parallel
Strand 4	C	144	146	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	120	first strand
Strand 2	C	128	129	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	174	first strand
Strand 2	C	417	419	parallel
Strand 3	C	184	188	anti-parallel
Strand 4	C	394	401	parallel
Strand 5	C	386	388	anti-parallel
Strand 6	C	567	574	anti-parallel
Strand 7	C	168	174	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	206	first strand
Strand 2	C	370	378	anti-parallel
Strand 3	C	277	284	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	212	first strand
Strand 2	C	243	244	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	360	first strand
Strand 2	E	86	89	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	408	409	first strand
Strand 2	C	549	552	anti-parallel
Strand 3	C	558	560	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	26	30	parallel
Strand 3	D	36	40	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	295	297	first strand
Strand 2	D	332	334	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	310	311	first strand
Strand 2	D	319	320	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	63	first strand
Strand 2	E	102	104	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	98	first strand
Strand 2	E	114	116	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	127	first strand
Strand 2	E	130	134	anti-parallel
Strand 3	E	445	447	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	145	first strand
Strand 2	E	150	151	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OGP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OGP