Analysis of interatomic Contacts of Structural Units in PDB entry:
7OGR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OGR entry

There are 6 chains in PDB entry 7OGR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
X	UNK 1	UNK 32
A	THR 293	LEU 485
B	LYS 307	GLN 521
C	SER 2	VAL 667
D	MET 1	VAL 383
E	PRO 2	LYS 543

There are 73 helices in PDB entry 7OGR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	X	4	12	Right-handed alpha
Helix 2	AA2	X	18	25	Right-handed alpha
Helix 3	AA3	A	313	321	Right-handed alpha
Helix 4	AA4	A	321	332	Right-handed alpha
Helix 5	AA5	A	336	347	Right-handed alpha
Helix 6	AA6	A	352	365	Right-handed alpha
Helix 7	AA7	A	430	437	Right-handed alpha
Helix 8	AA8	A	462	474	Right-handed alpha
Helix 9	AA9	A	480	485	Right-handed alpha
Helix 10	AB1	B	313	322	Right-handed alpha
Helix 11	AB2	B	324	331	Right-handed alpha
Helix 12	AB3	B	337	346	Right-handed alpha
Helix 13	AB4	B	347	353	Right-handed alpha
Helix 14	AB5	B	357	367	Right-handed alpha
Helix 15	AB6	B	373	380	Right-handed 310
Helix 16	AB7	B	381	399	Right-handed alpha
Helix 17	AB8	B	404	408	Right-handed 310
Helix 18	AB9	B	434	442	Right-handed alpha
Helix 19	AC1	B	461	474	Right-handed alpha
Helix 20	AC2	B	485	490	Right-handed alpha
Helix 21	AC3	B	504	520	Right-handed alpha
Helix 22	AC4	C	16	20	Right-handed 310
Helix 23	AC5	C	27	38	Right-handed alpha
Helix 24	AC6	C	55	60	Right-handed alpha
Helix 25	AC7	C	133	138	Right-handed alpha
Helix 26	AC8	C	189	193	Right-handed alpha
Helix 27	AC9	C	249	254	Right-handed alpha
Helix 28	AD1	C	255	261	Right-handed alpha
Helix 29	AD2	C	301	327	Right-handed alpha
Helix 30	AD3	C	334	348	Right-handed alpha
Helix 31	AD4	C	420	422	Right-handed 310
Helix 32	AD5	C	423	428	Right-handed alpha
Helix 33	AD6	C	430	453	Right-handed alpha
Helix 34	AD7	C	462	470	Right-handed alpha
Helix 35	AD8	C	472	491	Right-handed alpha
Helix 36	AD9	C	491	498	Right-handed alpha
Helix 37	AE1	C	504	512	Right-handed alpha
Helix 38	AE2	C	528	538	Right-handed alpha
Helix 39	AE3	C	634	640	Right-handed alpha
Helix 40	AE4	C	643	656	Right-handed alpha
Helix 41	AE5	D	15	20	Right-handed alpha
Helix 42	AE6	D	40	49	Right-handed alpha
Helix 43	AE7	D	50	51	Right-handed 310
Helix 44	AE8	D	52	56	Right-handed 310
Helix 45	AE9	D	63	67	Right-handed 310
Helix 46	AF1	D	92	109	Right-handed alpha
Helix 47	AF2	D	114	137	Right-handed alpha
Helix 48	AF3	D	145	153	Right-handed alpha
Helix 49	AF4	D	155	161	Right-handed alpha
Helix 50	AF5	D	168	174	Right-handed alpha
Helix 51	AF6	D	175	185	Right-handed alpha
Helix 52	AF7	D	195	201	Right-handed alpha
Helix 53	AF8	D	205	214	Right-handed alpha
Helix 54	AF9	D	241	261	Right-handed alpha
Helix 55	AG1	D	266	277	Right-handed alpha
Helix 56	AG2	D	303	307	Right-handed 310
Helix 57	AG3	D	350	355	Right-handed alpha
Helix 58	AG4	D	356	361	Right-handed 310
Helix 59	AG5	D	366	381	Right-handed alpha
Helix 60	AG6	E	3	13	Right-handed alpha
Helix 61	AG7	E	18	23	Right-handed alpha
Helix 62	AG8	E	25	30	Right-handed alpha
Helix 63	AG9	E	40	53	Right-handed alpha
Helix 64	AH1	E	54	56	Right-handed 310
Helix 65	AH2	E	70	79	Right-handed alpha
Helix 66	AH3	E	323	337	Right-handed alpha
Helix 67	AH4	E	356	366	Right-handed alpha
Helix 68	AH5	E	368	372	Right-handed 310
Helix 69	AH6	E	394	410	Right-handed alpha
Helix 70	AH7	E	417	429	Right-handed alpha
Helix 71	AH8	E	488	493	Right-handed 310
Helix 72	AH9	E	518	522	Right-handed 310
Helix 73	AI1	E	529	540	Right-handed alpha

There are 17 sheets in PDB entry 7OGR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	300	first strand
Strand 2	A	404	406	parallel
Strand 3	A	310	312	anti-parallel
Strand 4	A	388	395	parallel
Strand 5	A	372	376	anti-parallel
Strand 6	A	422	427	anti-parallel
Strand 7	A	294	300	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	412	first strand
Strand 2	B	478	480	anti-parallel
Strand 3	B	498	499	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	446	first strand
Strand 2	B	459	460	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	519	520	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	68	first strand
Strand 2	C	151	152	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	116	first strand
Strand 2	C	97	103	anti-parallel
Strand 3	C	73	78	anti-parallel
Strand 4	C	145	146	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	123	first strand
Strand 2	C	126	129	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	188	first strand
Strand 2	C	394	401	parallel
Strand 3	C	386	388	anti-parallel
Strand 4	C	567	575	anti-parallel
Strand 5	C	168	174	anti-parallel
Strand 6	C	417	419	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	206	first strand
Strand 2	C	370	378	anti-parallel
Strand 3	C	277	284	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	213	first strand
Strand 2	C	238	244	anti-parallel
Strand 3	C	268	271	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	358	first strand
Strand 2	E	86	87	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	550	552	first strand
Strand 2	C	558	560	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	27	30	parallel
Strand 3	D	36	39	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	297	first strand
Strand 2	D	332	335	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	68	first strand
Strand 2	E	96	99	anti-parallel
Strand 3	E	114	116	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	127	first strand
Strand 2	E	130	134	anti-parallel
Strand 3	E	445	447	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	145	first strand
Strand 2	E	150	152	anti-parallel
Strand 3	E	159	160	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OGR

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OGR