Analysis of interatomic Contacts of Structural Units in PDB entry:
7OGT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OGT entry

There are 2 chains in PDB entry 7OGT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 247ASN 943
B
 ASP 236GLN 952
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 7OGT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
247 374Right-handed alpha
Helix 2
AA2
A
381 526Right-handed alpha
Helix 3
AA3
A
534 537Right-handed 310
Helix 4
AA4
A
544 557Right-handed alpha
Helix 5
AA5
A
563 578Right-handed alpha
Helix 6
AA6
A
589 594Right-handed 310
Helix 7
AA7
A
607 612Right-handed 310
Helix 8
AA8
A
615 627Right-handed alpha
Helix 9
AA9
A
634 643Right-handed alpha
Helix 10
AB1
A
677 787Right-handed alpha
Helix 11
AB2
A
798 802Right-handed alpha
Helix 12
AB3
A
805 943Right-handed alpha
Helix 13
AB4
B
237 395Right-handed alpha
Helix 14
AB5
B
403 451Right-handed alpha
Helix 15
AB6
B
457 509Right-handed alpha
Helix 16
AB7
B
512 527Right-handed alpha
Helix 17
AB8
B
539 543Right-handed alpha
Helix 18
AB9
B
550 559Right-handed alpha
Helix 19
AC1
B
560 564Right-handed 310
Helix 20
AC2
B
569 580Right-handed alpha
Helix 21
AC3
B
604 608Right-handed 310
Helix 22
AC4
B
627 636Right-handed alpha
Helix 23
AC5
B
643 654Right-handed alpha
Helix 24
AC6
B
682 791Right-handed alpha
Helix 25
AC7
B
798 952Right-handed alpha
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There are 5 sheets in PDB entry 7OGT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
559 561anti-parallel
Strand 3
A
581 586parallel
Strand 4
B
672 675anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
630 632first strand
Strand 2
A
651 653parallel
Strand 3
A
658 659anti-parallel
Strand 4
A
665 666anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
544 546first strand
Strand 2
B
621 623anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
565 567first strand
Strand 2
B
590 592parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
615 616first strand
Strand 2
B
638 641anti-parallel
Strand 3
B
657 660parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il