Analysis of interatomic Contacts of Structural Units in PDB entry:
7OIX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OIX entry

There are 2 chains in PDB entry 7OIX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 58VAL 322
B
 CYS 44LEU 509
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 7OIX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 68Right-handed alpha
Helix 2
AA2
A
85 98Right-handed alpha
Helix 3
AA3
A
153 156Right-handed 310
Helix 4
AA4
A
192 196Right-handed 310
Helix 5
AA5
A
255 263Right-handed alpha
Helix 6
AA6
B
45 51Right-handed alpha
Helix 7
AA7
B
52 73Right-handed alpha
Helix 8
AA8
B
78 107Right-handed alpha
Helix 9
AA9
B
115 135Right-handed alpha
Helix 10
AB1
B
142 173Right-handed alpha
Helix 11
AB2
B
175 206Right-handed alpha
Helix 12
AB3
B
234 264Right-handed alpha
Helix 13
AB4
B
282 291Right-handed alpha
Helix 14
AB5
B
292 322Right-handed alpha
Helix 15
AB6
B
331 353Right-handed alpha
Helix 16
AB7
B
357 373Right-handed alpha
Helix 17
AB8
B
374 376Right-handed 310
Helix 18
AB9
B
380 417Right-handed alpha
Helix 19
AC1
B
423 453Right-handed alpha
Helix 20
AC2
B
463 489Right-handed alpha
Helix 21
AC3
B
494 509Right-handed alpha
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There are 6 sheets in PDB entry 7OIX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 78first strand
Strand 2
A
279 292anti-parallel
Strand 3
A
266 272anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 78first strand
Strand 2
A
279 292anti-parallel
Strand 3
A
308 309anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
313 320parallel
Strand 3
A
123 129anti-parallel
Strand 4
A
145 152parallel
Strand 5
A
177 179anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
313 320parallel
Strand 3
A
298 301anti-parallel
Strand 4
A
304 306anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
171 173anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
228 231anti-parallel
Strand 3
A
236 239anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il