Analysis of interatomic Contacts of Structural Units in PDB entry:
7OJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OJ4 entry

There is 1 chain in PDB entry 7OJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 182ARG 621
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 7OJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
208 221Right-handed alpha
Helix 2
AA2
A
230 241Right-handed alpha
Helix 3
AA3
A
268 276Right-handed alpha
Helix 4
AA4
A
296 312Right-handed alpha
Helix 5
AA5
A
354 360Right-handed alpha
Helix 6
AA6
A
370 384Right-handed alpha
Helix 7
AA7
A
395 400Right-handed alpha
Helix 8
AA8
A
400 407Right-handed alpha
Helix 9
AA9
A
415 419Right-handed 310
Helix 10
AB1
A
453 462Right-handed alpha
Helix 11
AB2
A
487 498Right-handed alpha
Helix 12
AB3
A
511 518Right-handed 310
Helix 13
AB4
A
528 542Right-handed alpha
Helix 14
AB5
A
545 556Right-handed alpha
Helix 15
AB6
A
562 566Right-handed 310
Helix 16
AB7
A
569 573Right-handed 310
Helix 17
AB8
A
600 604Right-handed 310
Helix 18
AB9
A
609 618Right-handed alpha
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There are 5 sheets in PDB entry 7OJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 197first strand
Strand 2
A
316 320parallel
Strand 3
A
286 290parallel
Strand 4
A
224 228parallel
Strand 5
A
263 267parallel
Strand 6
A
246 248parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 342first strand
Strand 2
A
471 476parallel
Strand 3
A
427 430parallel
Strand 4
A
364 367parallel
Strand 5
A
410 413parallel
Strand 6
A
388 391parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 435first strand
Strand 2
A
449 451anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 440first strand
Strand 2
A
443 445anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 585first strand
Strand 2
A
591 593anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il