Analysis of interatomic Contacts of Structural Units in PDB entry:
7OJ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OJ8 entry

There are 2 chains in PDB entry 7OJ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 34TYR 654
B
 GLY 34TYR 654
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 7OJ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
85 94Right-handed alpha
Helix 2
AA2
A
135 148Right-handed alpha
Helix 3
AA3
A
153 168Right-handed alpha
Helix 4
AA4
A
187 201Right-handed alpha
Helix 5
AA5
A
217 232Right-handed alpha
Helix 6
AA6
A
246 253Right-handed alpha
Helix 7
AA7
A
270 280Right-handed alpha
Helix 8
AA8
A
289 299Right-handed alpha
Helix 9
AA9
A
327 337Right-handed alpha
Helix 10
AB1
A
339 353Right-handed alpha
Helix 11
AB2
A
372 391Right-handed alpha
Helix 12
AB3
A
391 413Right-handed alpha
Helix 13
AB4
A
421 440Right-handed alpha
Helix 14
AB5
A
441 450Right-handed alpha
Helix 15
AB6
A
451 461Right-handed alpha
Helix 16
AB7
A
465 477Right-handed alpha
Helix 17
AB8
A
479 497Right-handed alpha
Helix 18
AB9
A
502 528Right-handed alpha
Helix 19
AC1
A
533 551Right-handed alpha
Helix 20
AC2
A
562 571Right-handed 310
Helix 21
AC3
A
572 586Right-handed alpha
Helix 22
AC4
A
594 598Right-handed 310
Helix 23
AC5
A
609 617Right-handed alpha
Helix 24
AC6
A
623 650Right-handed alpha
Helix 25
AC7
B
85 94Right-handed alpha
Helix 26
AC8
B
135 148Right-handed alpha
Helix 27
AC9
B
153 168Right-handed alpha
Helix 28
AD1
B
187 201Right-handed alpha
Helix 29
AD2
B
217 232Right-handed alpha
Helix 30
AD3
B
246 253Right-handed alpha
Helix 31
AD4
B
270 280Right-handed alpha
Helix 32
AD5
B
289 299Right-handed alpha
Helix 33
AD6
B
327 337Right-handed alpha
Helix 34
AD7
B
339 353Right-handed alpha
Helix 35
AD8
B
372 391Right-handed alpha
Helix 36
AD9
B
391 413Right-handed alpha
Helix 37
AE1
B
421 440Right-handed alpha
Helix 38
AE2
B
441 450Right-handed alpha
Helix 39
AE3
B
451 461Right-handed alpha
Helix 40
AE4
B
465 477Right-handed alpha
Helix 41
AE5
B
479 497Right-handed alpha
Helix 42
AE6
B
502 528Right-handed alpha
Helix 43
AE7
B
533 551Right-handed alpha
Helix 44
AE8
B
562 571Right-handed 310
Helix 45
AE9
B
572 586Right-handed alpha
Helix 46
AF1
B
594 598Right-handed 310
Helix 47
AF2
B
609 617Right-handed alpha
Helix 48
AF3
B
623 650Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 7OJ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
105 108anti-parallel
Strand 3
A
111 112anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
60 62anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 78first strand
Strand 2
A
237 241parallel
Strand 3
A
206 209parallel
Strand 4
A
121 124parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 259first strand
Strand 2
A
264 269anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
105 108anti-parallel
Strand 3
B
111 112anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 47first strand
Strand 2
B
60 62anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 78first strand
Strand 2
B
237 241parallel
Strand 3
B
206 209parallel
Strand 4
B
121 124parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 259first strand
Strand 2
B
264 269anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il