Analysis of interatomic Contacts of Structural Units in PDB entry:
7OJE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OJE entry

There are 4 chains in PDB entry 7OJE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 223ARG 592
B
 MET 1GLY 75
C
 SER 226ARG 592
D
 MET 1GLY 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 7OJE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
239 249Right-handed alpha
Helix 2
AA2
A
264 280Right-handed alpha
Helix 3
AA3
A
286 301Right-handed alpha
Helix 4
AA4
A
305 322Right-handed alpha
Helix 5
AA5
A
333 344Right-handed alpha
Helix 6
AA6
A
370 384Right-handed alpha
Helix 7
AA7
A
386 394Right-handed alpha
Helix 8
AA8
A
395 398Right-handed 310
Helix 9
AA9
A
409 423Right-handed alpha
Helix 10
AB1
A
426 433Right-handed alpha
Helix 11
AB2
A
446 456Right-handed alpha
Helix 12
AB3
A
470 474Right-handed 310
Helix 13
AB4
A
475 487Right-handed alpha
Helix 14
AB5
A
488 490Right-handed 310
Helix 15
AB6
A
530 536Right-handed alpha
Helix 16
AB7
A
537 539Right-handed 310
Helix 17
AB8
A
544 549Right-handed 310
Helix 18
AB9
A
553 557Right-handed 310
Helix 19
AC1
A
573 580Right-handed alpha
Helix 20
AC2
B
22 35Right-handed alpha
Helix 21
AC3
B
37 39Right-handed 310
Helix 22
AC4
C
233 237Right-handed 310
Helix 23
AC5
C
239 249Right-handed alpha
Helix 24
AC6
C
264 279Right-handed alpha
Helix 25
AC7
C
286 301Right-handed alpha
Helix 26
AC8
C
305 322Right-handed alpha
Helix 27
AC9
C
333 345Right-handed alpha
Helix 28
AD1
C
370 384Right-handed alpha
Helix 29
AD2
C
386 394Right-handed alpha
Helix 30
AD3
C
395 398Right-handed 310
Helix 31
AD4
C
409 423Right-handed alpha
Helix 32
AD5
C
426 433Right-handed alpha
Helix 33
AD6
C
446 456Right-handed alpha
Helix 34
AD7
C
470 474Right-handed 310
Helix 35
AD8
C
475 487Right-handed alpha
Helix 36
AD9
C
530 536Right-handed alpha
Helix 37
AE1
C
537 539Right-handed 310
Helix 38
AE2
C
542 550Right-handed alpha
Helix 39
AE3
C
553 557Right-handed 310
Helix 40
AE4
C
573 580Right-handed alpha
Helix 41
AE5
D
22 35Right-handed alpha
Helix 42
AE6
D
37 39Right-handed 310
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There are 10 sheets in PDB entry 7OJE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 331first strand
Strand 2
A
359 360anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 353first strand
Strand 2
A
505 515anti-parallel
Strand 3
A
520 525anti-parallel
Strand 4
A
551 552anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 353first strand
Strand 2
A
505 515anti-parallel
Strand 3
A
498 502anti-parallel
Strand 4
A
562 570anti-parallel
Strand 5
A
458 465anti-parallel
Strand 6
A
586 588parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 445first strand
Strand 2
B
74 75anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 7anti-parallel
Strand 3
B
66 71parallel
Strand 4
B
41 45anti-parallel
Strand 5
B
48 49anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
330 331first strand
Strand 2
C
359 360anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
348 353first strand
Strand 2
C
505 515anti-parallel
Strand 3
C
520 525anti-parallel
Strand 4
C
551 552anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
348 353first strand
Strand 2
C
505 515anti-parallel
Strand 3
C
498 502anti-parallel
Strand 4
C
562 570anti-parallel
Strand 5
C
458 465anti-parallel
Strand 6
C
585 587parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
444 445first strand
Strand 2
D
74 75anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
2 7anti-parallel
Strand 3
D
66 71parallel
Strand 4
D
41 45anti-parallel
Strand 5
D
48 49anti-parallel
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