Analysis of interatomic Contacts of Structural Units in PDB entry:
7OJH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OJH entry

There are 2 chains in PDB entry 7OJH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 34TYR 654
A
 GLY 34TYR 654
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 56 helices in PDB entry 7OJH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
85 95Right-handed alpha
Helix 2
AA2
B
116 121Right-handed alpha
Helix 3
AA3
B
135 148Right-handed alpha
Helix 4
AA4
B
153 169Right-handed alpha
Helix 5
AA5
B
170 174Right-handed 310
Helix 6
AA6
B
187 201Right-handed alpha
Helix 7
AA7
B
217 233Right-handed alpha
Helix 8
AA8
B
246 251Right-handed alpha
Helix 9
AA9
B
269 280Right-handed alpha
Helix 10
AB1
B
289 300Right-handed alpha
Helix 11
AB2
B
329 338Right-handed alpha
Helix 12
AB3
B
339 354Right-handed alpha
Helix 13
AB4
B
372 391Right-handed alpha
Helix 14
AB5
B
392 413Right-handed alpha
Helix 15
AB6
B
421 440Right-handed alpha
Helix 16
AB7
B
441 444Right-handed 310
Helix 17
AB8
B
445 450Right-handed alpha
Helix 18
AB9
B
451 461Right-handed alpha
Helix 19
AC1
B
465 478Right-handed alpha
Helix 20
AC2
B
478 497Right-handed alpha
Helix 21
AC3
B
502 529Right-handed alpha
Helix 22
AC4
B
534 551Right-handed alpha
Helix 23
AC5
B
552 557Right-handed alpha
Helix 24
AC6
B
562 567Right-handed alpha
Helix 25
AC7
B
568 571Right-handed 310
Helix 26
AC8
B
572 586Right-handed alpha
Helix 27
AC9
B
609 618Right-handed alpha
Helix 28
AD1
B
623 650Right-handed alpha
Helix 29
AD2
A
85 95Right-handed alpha
Helix 30
AD3
A
116 121Right-handed alpha
Helix 31
AD4
A
135 148Right-handed alpha
Helix 32
AD5
A
153 169Right-handed alpha
Helix 33
AD6
A
170 174Right-handed 310
Helix 34
AD7
A
187 201Right-handed alpha
Helix 35
AD8
A
217 233Right-handed alpha
Helix 36
AD9
A
246 251Right-handed alpha
Helix 37
AE1
A
269 280Right-handed alpha
Helix 38
AE2
A
289 300Right-handed alpha
Helix 39
AE3
A
329 338Right-handed alpha
Helix 40
AE4
A
339 354Right-handed alpha
Helix 41
AE5
A
372 391Right-handed alpha
Helix 42
AE6
A
392 413Right-handed alpha
Helix 43
AE7
A
421 440Right-handed alpha
Helix 44
AE8
A
441 444Right-handed 310
Helix 45
AE9
A
445 450Right-handed alpha
Helix 46
AF1
A
451 461Right-handed alpha
Helix 47
AF2
A
465 478Right-handed alpha
Helix 48
AF3
A
478 497Right-handed alpha
Helix 49
AF4
A
502 529Right-handed alpha
Helix 50
AF5
A
534 551Right-handed alpha
Helix 51
AF6
A
552 557Right-handed alpha
Helix 52
AF7
A
562 567Right-handed alpha
Helix 53
AF8
A
568 571Right-handed 310
Helix 54
AF9
A
572 586Right-handed alpha
Helix 55
AG1
A
609 618Right-handed alpha
Helix 56
AG2
A
623 650Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7OJH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 71first strand
Strand 2
B
37 45anti-parallel
Strand 3
B
105 108anti-parallel
Strand 4
B
111 112anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 78first strand
Strand 2
B
237 241parallel
Strand 3
B
206 210parallel
Strand 4
B
122 124parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 260first strand
Strand 2
B
263 268anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 71first strand
Strand 2
A
37 45anti-parallel
Strand 3
A
105 108anti-parallel
Strand 4
A
111 112anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 78first strand
Strand 2
A
237 241parallel
Strand 3
A
206 210parallel
Strand 4
A
122 124parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 260first strand
Strand 2
A
263 268anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il