Analysis of interatomic Contacts of Structural Units in PDB entry:
7OJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OJI entry

There are 2 chains in PDB entry 7OJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 34TYR 654
B
 GLY 34TYR 654
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 7OJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
85 94Right-handed alpha
Helix 2
AA2
A
116 119Right-handed 310
Helix 3
AA3
A
135 148Right-handed alpha
Helix 4
AA4
A
153 169Right-handed alpha
Helix 5
AA5
A
170 174Right-handed 310
Helix 6
AA6
A
187 201Right-handed alpha
Helix 7
AA7
A
217 233Right-handed alpha
Helix 8
AA8
A
246 253Right-handed alpha
Helix 9
AA9
A
271 281Right-handed alpha
Helix 10
AB1
A
289 299Right-handed alpha
Helix 11
AB2
A
327 338Right-handed alpha
Helix 12
AB3
A
339 353Right-handed alpha
Helix 13
AB4
A
372 390Right-handed alpha
Helix 14
AB5
A
395 413Right-handed alpha
Helix 15
AB6
A
421 440Right-handed alpha
Helix 16
AB7
A
441 451Right-handed alpha
Helix 17
AB8
A
451 462Right-handed alpha
Helix 18
AB9
A
465 477Right-handed alpha
Helix 19
AC1
A
477 498Right-handed alpha
Helix 20
AC2
A
502 529Right-handed alpha
Helix 21
AC3
A
533 550Right-handed alpha
Helix 22
AC4
A
565 571Right-handed 310
Helix 23
AC5
A
572 587Right-handed alpha
Helix 24
AC6
A
594 601Right-handed alpha
Helix 25
AC7
A
609 617Right-handed alpha
Helix 26
AC8
A
623 650Right-handed alpha
Helix 27
AC9
B
85 94Right-handed alpha
Helix 28
AD1
B
116 119Right-handed 310
Helix 29
AD2
B
135 148Right-handed alpha
Helix 30
AD3
B
153 169Right-handed alpha
Helix 31
AD4
B
170 174Right-handed 310
Helix 32
AD5
B
187 201Right-handed alpha
Helix 33
AD6
B
217 233Right-handed alpha
Helix 34
AD7
B
246 253Right-handed alpha
Helix 35
AD8
B
271 281Right-handed alpha
Helix 36
AD9
B
289 299Right-handed alpha
Helix 37
AE1
B
327 338Right-handed alpha
Helix 38
AE2
B
339 353Right-handed alpha
Helix 39
AE3
B
372 390Right-handed alpha
Helix 40
AE4
B
395 413Right-handed alpha
Helix 41
AE5
B
421 440Right-handed alpha
Helix 42
AE6
B
441 451Right-handed alpha
Helix 43
AE7
B
451 462Right-handed alpha
Helix 44
AE8
B
465 477Right-handed alpha
Helix 45
AE9
B
477 498Right-handed alpha
Helix 46
AF1
B
502 529Right-handed alpha
Helix 47
AF2
B
533 550Right-handed alpha
Helix 48
AF3
B
565 571Right-handed 310
Helix 49
AF4
B
572 587Right-handed alpha
Helix 50
AF5
B
594 601Right-handed alpha
Helix 51
AF6
B
609 617Right-handed alpha
Helix 52
AF7
B
623 650Right-handed alpha
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There are 4 sheets in PDB entry 7OJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 71first strand
Strand 2
A
37 46anti-parallel
Strand 3
A
105 108anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 124first strand
Strand 2
A
206 209parallel
Strand 3
A
237 241parallel
Strand 4
A
74 79parallel
Strand 5
A
255 260parallel
Strand 6
A
263 268anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 71first strand
Strand 2
B
37 46anti-parallel
Strand 3
B
105 108anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 124first strand
Strand 2
B
206 209parallel
Strand 3
B
237 241parallel
Strand 4
B
74 79parallel
Strand 5
B
255 260parallel
Strand 6
B
263 268anti-parallel
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