Analysis of interatomic Contacts of Structural Units in PDB entry:
7OJJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OJJ entry

There is 1 chain in PDB entry 7OJJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	MET 1	LYS 2208

There are 83 helices in PDB entry 7OJJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	1	16	Right-handed alpha
Helix 2	AA2	L	22	30	Right-handed alpha
Helix 3	AA3	L	34	59	Right-handed alpha
Helix 4	AA4	L	68	75	Right-handed alpha
Helix 5	AA5	L	112	131	Right-handed alpha
Helix 6	AA6	L	132	134	Right-handed 310
Helix 7	AA7	L	153	168	Right-handed alpha
Helix 8	AA8	L	170	176	Right-handed alpha
Helix 9	AA9	L	179	188	Right-handed alpha
Helix 10	AB1	L	200	206	Right-handed 310
Helix 11	AB2	L	211	222	Right-handed alpha
Helix 12	AB3	L	232	251	Right-handed alpha
Helix 13	AB4	L	262	272	Right-handed alpha
Helix 14	AB5	L	284	293	Right-handed alpha
Helix 15	AB6	L	296	304	Right-handed alpha
Helix 16	AB7	L	311	315	Right-handed 310
Helix 17	AB8	L	321	335	Right-handed alpha
Helix 18	AB9	L	345	365	Right-handed alpha
Helix 19	AC1	L	385	405	Right-handed alpha
Helix 20	AC2	L	412	420	Right-handed alpha
Helix 21	AC3	L	421	432	Right-handed alpha
Helix 22	AC4	L	445	449	Right-handed 310
Helix 23	AC5	L	452	459	Right-handed alpha
Helix 24	AC6	L	492	507	Right-handed alpha
Helix 25	AC7	L	580	584	Right-handed 310
Helix 26	AC8	L	587	599	Right-handed alpha
Helix 27	AC9	L	604	609	Right-handed 310
Helix 28	AD1	L	610	628	Right-handed alpha
Helix 29	AD2	L	630	639	Right-handed alpha
Helix 30	AD3	L	639	649	Right-handed alpha
Helix 31	AD4	L	656	661	Right-handed 310
Helix 32	AD5	L	668	684	Right-handed alpha
Helix 33	AD6	L	691	704	Right-handed alpha
Helix 34	AD7	L	705	709	Right-handed 310
Helix 35	AD8	L	718	729	Right-handed alpha
Helix 36	AD9	L	729	734	Right-handed alpha
Helix 37	AE1	L	746	761	Right-handed alpha
Helix 38	AE2	L	780	792	Right-handed alpha
Helix 39	AE3	L	798	803	Right-handed alpha
Helix 40	AE4	L	818	823	Right-handed 310
Helix 41	AE5	L	842	859	Right-handed alpha
Helix 42	AE6	L	872	884	Right-handed alpha
Helix 43	AE7	L	897	904	Right-handed alpha
Helix 44	AE8	L	908	923	Right-handed alpha
Helix 45	AE9	L	1062	1067	Right-handed alpha
Helix 46	AF1	L	1074	1084	Right-handed alpha
Helix 47	AF2	L	1093	1098	Right-handed alpha
Helix 48	AF3	L	1137	1156	Right-handed alpha
Helix 49	AF4	L	1166	1181	Right-handed alpha
Helix 50	AF5	L	1199	1208	Right-handed alpha
Helix 51	AF6	L	1219	1236	Right-handed alpha
Helix 52	AF7	L	1242	1259	Right-handed alpha
Helix 53	AF8	L	1267	1278	Right-handed alpha
Helix 54	AF9	L	1297	1320	Right-handed alpha
Helix 55	AG1	L	1338	1348	Right-handed alpha
Helix 56	AG2	L	1348	1365	Right-handed alpha
Helix 57	AG3	L	1396	1406	Right-handed alpha
Helix 58	AG4	L	1412	1429	Right-handed alpha
Helix 59	AG5	L	1433	1451	Right-handed alpha
Helix 60	AG6	L	1465	1471	Right-handed alpha
Helix 61	AG7	L	1473	1486	Right-handed alpha
Helix 62	AG8	L	1489	1505	Right-handed alpha
Helix 63	AG9	L	1524	1534	Right-handed alpha
Helix 64	AH1	L	1539	1543	Right-handed 310
Helix 65	AH2	L	1613	1624	Right-handed alpha
Helix 66	AH3	L	1639	1649	Right-handed alpha
Helix 67	AH4	L	1676	1680	Right-handed 310
Helix 68	AH5	L	1684	1699	Right-handed alpha
Helix 69	AH6	L	1701	1705	Right-handed 310
Helix 70	AH7	L	1740	1751	Right-handed alpha
Helix 71	AH8	L	1751	1757	Right-handed alpha
Helix 72	AH9	L	1759	1764	Right-handed alpha
Helix 73	AI1	L	1777	1790	Right-handed alpha
Helix 74	AI2	L	1812	1816	Right-handed alpha
Helix 75	AI3	L	1834	1852	Right-handed alpha
Helix 76	AI4	L	1860	1864	Right-handed 310
Helix 77	AI5	L	1882	1884	Right-handed 310
Helix 78	AI6	L	1885	1892	Right-handed alpha
Helix 79	AI7	L	1902	1906	Right-handed 310
Helix 80	AI8	L	2102	2114	Right-handed alpha
Helix 81	AI9	L	2118	2134	Right-handed alpha
Helix 82	AJ1	L	2144	2152	Right-handed alpha
Helix 83	AJ2	L	2155	2168	Right-handed alpha

There are 12 sheets in PDB entry 7OJJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	91	94	first strand
Strand 2	L	97	100	anti-parallel
Strand 3	L	136	138	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	207	208	first strand
Strand 2	L	1106	1108	parallel
Strand 3	L	1111	1112	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	259	260	first strand
Strand 2	L	651	652	anti-parallel
Strand 3	L	1375	1377	anti-parallel
Strand 4	L	1186	1190	anti-parallel
Strand 5	L	1332	1336	anti-parallel
Strand 6	L	1325	1328	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	370	371	first strand
Strand 2	L	374	376	anti-parallel
Strand 3	L	382	383	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	535	541	first strand
Strand 2	L	544	550	anti-parallel
Strand 3	L	560	563	anti-parallel
Strand 4	L	571	573	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	738	739	first strand
Strand 2	L	1285	1287	anti-parallel
Strand 3	L	1238	1240	anti-parallel
Strand 4	L	1118	1124	parallel
Strand 5	L	1131	1136	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	827	829	first strand
Strand 2	L	1071	1073	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1653	1656	first strand
Strand 2	L	1662	1665	anti-parallel
Strand 3	L	1545	1547	anti-parallel
Strand 4	L	1682	1683	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1707	1709	first strand
Strand 2	L	1819	1821	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1723	1726	first strand
Strand 2	L	1808	1811	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1854	1855	first strand
Strand 2	L	2081	2082	anti-parallel
Strand 3	L	2087	2089	anti-parallel
Strand 4	L	2092	2095	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	2171	2172	first strand
Strand 2	L	2177	2180	anti-parallel
Strand 3	L	2187	2190	anti-parallel
Strand 4	L	2201	2204	anti-parallel
Strand 5	L	2196	2198	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OJJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OJJ