Analysis of interatomic Contacts of Structural Units in PDB entry:
7OJK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OJK entry

There are 3 chains in PDB entry 7OJK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	MET 1	GLU 2165
E	G 3	U 11
D	G 9	C 20

There are 85 helices in PDB entry 7OJK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	1	15	Right-handed alpha
Helix 2	AA2	L	19	21	Right-handed 310
Helix 3	AA3	L	22	30	Right-handed alpha
Helix 4	AA4	L	34	59	Right-handed alpha
Helix 5	AA5	L	68	75	Right-handed alpha
Helix 6	AA6	L	112	131	Right-handed alpha
Helix 7	AA7	L	132	134	Right-handed 310
Helix 8	AA8	L	153	169	Right-handed alpha
Helix 9	AA9	L	170	176	Right-handed alpha
Helix 10	AB1	L	179	188	Right-handed alpha
Helix 11	AB2	L	200	206	Right-handed 310
Helix 12	AB3	L	214	224	Right-handed alpha
Helix 13	AB4	L	232	251	Right-handed alpha
Helix 14	AB5	L	262	272	Right-handed alpha
Helix 15	AB6	L	284	293	Right-handed alpha
Helix 16	AB7	L	296	303	Right-handed alpha
Helix 17	AB8	L	324	336	Right-handed alpha
Helix 18	AB9	L	345	365	Right-handed alpha
Helix 19	AC1	L	385	405	Right-handed alpha
Helix 20	AC2	L	412	433	Right-handed alpha
Helix 21	AC3	L	453	459	Right-handed alpha
Helix 22	AC4	L	491	506	Right-handed alpha
Helix 23	AC5	L	507	509	Right-handed 310
Helix 24	AC6	L	522	527	Right-handed 310
Helix 25	AC7	L	589	600	Right-handed alpha
Helix 26	AC8	L	604	609	Right-handed 310
Helix 27	AC9	L	610	628	Right-handed alpha
Helix 28	AD1	L	630	632	Right-handed 310
Helix 29	AD2	L	633	648	Right-handed alpha
Helix 30	AD3	L	656	660	Right-handed 310
Helix 31	AD4	L	667	685	Right-handed alpha
Helix 32	AD5	L	691	704	Right-handed alpha
Helix 33	AD6	L	716	729	Right-handed alpha
Helix 34	AD7	L	729	734	Right-handed alpha
Helix 35	AD8	L	746	761	Right-handed alpha
Helix 36	AD9	L	780	793	Right-handed alpha
Helix 37	AE1	L	798	803	Right-handed alpha
Helix 38	AE2	L	842	861	Right-handed alpha
Helix 39	AE3	L	862	865	Right-handed 310
Helix 40	AE4	L	870	884	Right-handed alpha
Helix 41	AE5	L	897	905	Right-handed alpha
Helix 42	AE6	L	908	925	Right-handed alpha
Helix 43	AE7	L	943	949	Right-handed 310
Helix 44	AE8	L	952	964	Right-handed alpha
Helix 45	AE9	L	977	991	Right-handed alpha
Helix 46	AF1	L	991	999	Right-handed alpha
Helix 47	AF2	L	1014	1024	Right-handed alpha
Helix 48	AF3	L	1025	1038	Right-handed alpha
Helix 49	AF4	L	1059	1067	Right-handed alpha
Helix 50	AF5	L	1075	1084	Right-handed alpha
Helix 51	AF6	L	1092	1096	Right-handed 310
Helix 52	AF7	L	1137	1156	Right-handed alpha
Helix 53	AF8	L	1168	1180	Right-handed alpha
Helix 54	AF9	L	1199	1209	Right-handed alpha
Helix 55	AG1	L	1218	1235	Right-handed alpha
Helix 56	AG2	L	1242	1259	Right-handed alpha
Helix 57	AG3	L	1267	1278	Right-handed alpha
Helix 58	AG4	L	1297	1320	Right-handed alpha
Helix 59	AG5	L	1338	1345	Right-handed alpha
Helix 60	AG6	L	1348	1366	Right-handed alpha
Helix 61	AG7	L	1396	1406	Right-handed alpha
Helix 62	AG8	L	1414	1429	Right-handed alpha
Helix 63	AG9	L	1433	1450	Right-handed alpha
Helix 64	AH1	L	1466	1471	Right-handed alpha
Helix 65	AH2	L	1475	1486	Right-handed alpha
Helix 66	AH3	L	1489	1506	Right-handed alpha
Helix 67	AH4	L	1524	1534	Right-handed alpha
Helix 68	AH5	L	1613	1624	Right-handed alpha
Helix 69	AH6	L	1639	1649	Right-handed alpha
Helix 70	AH7	L	1667	1671	Right-handed 310
Helix 71	AH8	L	1684	1699	Right-handed alpha
Helix 72	AH9	L	1700	1705	Right-handed 310
Helix 73	AI1	L	1740	1751	Right-handed alpha
Helix 74	AI2	L	1751	1757	Right-handed alpha
Helix 75	AI3	L	1759	1764	Right-handed alpha
Helix 76	AI4	L	1777	1790	Right-handed alpha
Helix 77	AI5	L	1835	1852	Right-handed alpha
Helix 78	AI6	L	1878	1884	Right-handed 310
Helix 79	AI7	L	1885	1892	Right-handed alpha
Helix 80	AI8	L	1893	1896	Right-handed 310
Helix 81	AI9	L	1902	1906	Right-handed 310
Helix 82	AJ1	L	2102	2114	Right-handed alpha
Helix 83	AJ2	L	2118	2134	Right-handed alpha
Helix 84	AJ3	L	2144	2152	Right-handed alpha
Helix 85	AJ4	L	2155	2165	Right-handed alpha

There are 9 sheets in PDB entry 7OJK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	91	94	first strand
Strand 2	L	97	100	anti-parallel
Strand 3	L	136	138	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	258	260	first strand
Strand 2	L	651	653	anti-parallel
Strand 3	L	1375	1377	anti-parallel
Strand 4	L	1186	1189	anti-parallel
Strand 5	L	1333	1337	anti-parallel
Strand 6	L	1324	1326	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	375	376	first strand
Strand 2	L	382	383	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	536	540	first strand
Strand 2	L	545	549	anti-parallel
Strand 3	L	561	563	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	826	829	first strand
Strand 2	L	1071	1074	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1120	1125	first strand
Strand 2	L	1130	1135	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1653	1655	first strand
Strand 2	L	1663	1665	anti-parallel
Strand 3	L	1545	1548	anti-parallel
Strand 4	L	1681	1683	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1724	1726	first strand
Strand 2	L	1808	1810	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1854	1855	first strand
Strand 2	L	2081	2082	anti-parallel
Strand 3	L	2087	2089	anti-parallel
Strand 4	L	2092	2093	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OJK

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OJK