Analysis of interatomic Contacts of Structural Units in PDB entry:
7OJL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OJL entry

There are 3 chains in PDB entry 7OJL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	GLY 199	HIS 1823
E	G 3	C 15
D	G 1	C 20

There are 72 helices in PDB entry 7OJL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	202	206	Right-handed 310
Helix 2	AA2	L	213	221	Right-handed alpha
Helix 3	AA3	L	230	251	Right-handed alpha
Helix 4	AA4	L	262	272	Right-handed alpha
Helix 5	AA5	L	284	293	Right-handed alpha
Helix 6	AA6	L	296	303	Right-handed alpha
Helix 7	AA7	L	321	336	Right-handed alpha
Helix 8	AA8	L	344	365	Right-handed alpha
Helix 9	AA9	L	385	404	Right-handed alpha
Helix 10	AB1	L	412	433	Right-handed alpha
Helix 11	AB2	L	438	442	Right-handed 310
Helix 12	AB3	L	445	449	Right-handed 310
Helix 13	AB4	L	453	459	Right-handed alpha
Helix 14	AB5	L	491	507	Right-handed alpha
Helix 15	AB6	L	521	527	Right-handed 310
Helix 16	AB7	L	576	584	Right-handed 310
Helix 17	AB8	L	588	601	Right-handed alpha
Helix 18	AB9	L	607	609	Right-handed 310
Helix 19	AC1	L	610	628	Right-handed alpha
Helix 20	AC2	L	631	649	Right-handed alpha
Helix 21	AC3	L	656	661	Right-handed alpha
Helix 22	AC4	L	666	684	Right-handed alpha
Helix 23	AC5	L	691	705	Right-handed alpha
Helix 24	AC6	L	706	709	Right-handed 310
Helix 25	AC7	L	715	735	Right-handed alpha
Helix 26	AC8	L	746	761	Right-handed alpha
Helix 27	AC9	L	780	793	Right-handed alpha
Helix 28	AD1	L	798	803	Right-handed alpha
Helix 29	AD2	L	842	860	Right-handed alpha
Helix 30	AD3	L	862	866	Right-handed 310
Helix 31	AD4	L	870	884	Right-handed alpha
Helix 32	AD5	L	906	925	Right-handed alpha
Helix 33	AD6	L	942	949	Right-handed 310
Helix 34	AD7	L	952	966	Right-handed alpha
Helix 35	AD8	L	977	991	Right-handed alpha
Helix 36	AD9	L	991	999	Right-handed alpha
Helix 37	AE1	L	1014	1023	Right-handed alpha
Helix 38	AE2	L	1025	1038	Right-handed alpha
Helix 39	AE3	L	1059	1068	Right-handed alpha
Helix 40	AE4	L	1074	1085	Right-handed alpha
Helix 41	AE5	L	1093	1097	Right-handed 310
Helix 42	AE6	L	1137	1158	Right-handed alpha
Helix 43	AE7	L	1165	1182	Right-handed alpha
Helix 44	AE8	L	1193	1198	Right-handed alpha
Helix 45	AE9	L	1199	1208	Right-handed alpha
Helix 46	AF1	L	1218	1236	Right-handed alpha
Helix 47	AF2	L	1242	1259	Right-handed alpha
Helix 48	AF3	L	1267	1278	Right-handed alpha
Helix 49	AF4	L	1297	1320	Right-handed alpha
Helix 50	AF5	L	1338	1348	Right-handed alpha
Helix 51	AF6	L	1348	1366	Right-handed alpha
Helix 52	AF7	L	1396	1406	Right-handed alpha
Helix 53	AF8	L	1412	1429	Right-handed alpha
Helix 54	AF9	L	1433	1451	Right-handed alpha
Helix 55	AG1	L	1466	1471	Right-handed alpha
Helix 56	AG2	L	1473	1486	Right-handed alpha
Helix 57	AG3	L	1490	1507	Right-handed alpha
Helix 58	AG4	L	1511	1517	Right-handed alpha
Helix 59	AG5	L	1522	1533	Right-handed alpha
Helix 60	AG6	L	1578	1589	Right-handed alpha
Helix 61	AG7	L	1612	1624	Right-handed alpha
Helix 62	AG8	L	1638	1649	Right-handed alpha
Helix 63	AG9	L	1668	1672	Right-handed 310
Helix 64	AH1	L	1677	1679	Right-handed 310
Helix 65	AH2	L	1683	1697	Right-handed alpha
Helix 66	AH3	L	1700	1705	Right-handed 310
Helix 67	AH4	L	1740	1745	Right-handed alpha
Helix 68	AH5	L	1751	1758	Right-handed alpha
Helix 69	AH6	L	1759	1763	Right-handed 310
Helix 70	AH7	L	1779	1787	Right-handed alpha
Helix 71	AH8	L	1796	1802	Right-handed alpha
Helix 72	AH9	L	1813	1818	Right-handed 310

There are 7 sheets in PDB entry 7OJL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	258	260	first strand
Strand 2	L	651	653	anti-parallel
Strand 3	L	1375	1377	anti-parallel
Strand 4	L	1186	1189	anti-parallel
Strand 5	L	1333	1337	anti-parallel
Strand 6	L	1324	1327	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	374	376	first strand
Strand 2	L	381	384	anti-parallel
Strand 3	L	533	541	anti-parallel
Strand 4	L	544	550	anti-parallel
Strand 5	L	558	563	anti-parallel
Strand 6	L	571	575	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	468	469	first strand
Strand 2	L	529	530	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	738	739	first strand
Strand 2	L	1285	1287	anti-parallel
Strand 3	L	1238	1240	anti-parallel
Strand 4	L	1118	1120	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	827	829	first strand
Strand 2	L	1071	1073	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1653	1656	first strand
Strand 2	L	1662	1665	anti-parallel
Strand 3	L	1545	1548	anti-parallel
Strand 4	L	1681	1682	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1723	1726	first strand
Strand 2	L	1808	1811	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OJL

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OJL