Analysis of interatomic Contacts of Structural Units in PDB entry:
7OJN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OJN entry

There are 5 chains in PDB entry 7OJN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	MET 1	LYS 2208
D	G 1	A 12
R	U 14	G 24
M	U 18	G 26
E	C 10	G 16

There are 91 helices in PDB entry 7OJN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	1	16	Right-handed alpha
Helix 2	AA2	L	19	21	Right-handed 310
Helix 3	AA3	L	22	30	Right-handed alpha
Helix 4	AA4	L	34	59	Right-handed alpha
Helix 5	AA5	L	68	76	Right-handed alpha
Helix 6	AA6	L	112	133	Right-handed alpha
Helix 7	AA7	L	153	172	Right-handed alpha
Helix 8	AA8	L	182	188	Right-handed alpha
Helix 9	AA9	L	200	206	Right-handed 310
Helix 10	AB1	L	211	222	Right-handed alpha
Helix 11	AB2	L	230	251	Right-handed alpha
Helix 12	AB3	L	262	272	Right-handed alpha
Helix 13	AB4	L	284	293	Right-handed alpha
Helix 14	AB5	L	296	303	Right-handed alpha
Helix 15	AB6	L	321	336	Right-handed alpha
Helix 16	AB7	L	341	365	Right-handed alpha
Helix 17	AB8	L	385	404	Right-handed alpha
Helix 18	AB9	L	412	434	Right-handed alpha
Helix 19	AC1	L	445	449	Right-handed 310
Helix 20	AC2	L	452	459	Right-handed alpha
Helix 21	AC3	L	475	479	Right-handed 310
Helix 22	AC4	L	491	507	Right-handed alpha
Helix 23	AC5	L	508	510	Right-handed 310
Helix 24	AC6	L	521	526	Right-handed 310
Helix 25	AC7	L	576	580	Right-handed 310
Helix 26	AC8	L	587	601	Right-handed alpha
Helix 27	AC9	L	610	628	Right-handed alpha
Helix 28	AD1	L	632	648	Right-handed alpha
Helix 29	AD2	L	655	661	Right-handed alpha
Helix 30	AD3	L	666	684	Right-handed alpha
Helix 31	AD4	L	691	704	Right-handed alpha
Helix 32	AD5	L	705	709	Right-handed 310
Helix 33	AD6	L	715	735	Right-handed alpha
Helix 34	AD7	L	746	761	Right-handed alpha
Helix 35	AD8	L	780	793	Right-handed alpha
Helix 36	AD9	L	798	802	Right-handed 310
Helix 37	AE1	L	817	822	Right-handed 310
Helix 38	AE2	L	842	862	Right-handed alpha
Helix 39	AE3	L	871	880	Right-handed alpha
Helix 40	AE4	L	911	925	Right-handed alpha
Helix 41	AE5	L	1060	1066	Right-handed alpha
Helix 42	AE6	L	1075	1084	Right-handed alpha
Helix 43	AE7	L	1092	1098	Right-handed alpha
Helix 44	AE8	L	1137	1156	Right-handed alpha
Helix 45	AE9	L	1165	1182	Right-handed alpha
Helix 46	AF1	L	1193	1198	Right-handed alpha
Helix 47	AF2	L	1199	1209	Right-handed alpha
Helix 48	AF3	L	1218	1236	Right-handed alpha
Helix 49	AF4	L	1242	1258	Right-handed alpha
Helix 50	AF5	L	1267	1280	Right-handed alpha
Helix 51	AF6	L	1297	1320	Right-handed alpha
Helix 52	AF7	L	1338	1348	Right-handed alpha
Helix 53	AF8	L	1348	1366	Right-handed alpha
Helix 54	AF9	L	1396	1405	Right-handed alpha
Helix 55	AG1	L	1412	1430	Right-handed alpha
Helix 56	AG2	L	1433	1451	Right-handed alpha
Helix 57	AG3	L	1465	1471	Right-handed alpha
Helix 58	AG4	L	1473	1486	Right-handed alpha
Helix 59	AG5	L	1489	1506	Right-handed alpha
Helix 60	AG6	L	1522	1533	Right-handed alpha
Helix 61	AG7	L	1539	1544	Right-handed alpha
Helix 62	AG8	L	1578	1589	Right-handed alpha
Helix 63	AG9	L	1592	1611	Right-handed alpha
Helix 64	AH1	L	1615	1624	Right-handed alpha
Helix 65	AH2	L	1638	1648	Right-handed alpha
Helix 66	AH3	L	1667	1671	Right-handed 310
Helix 67	AH4	L	1674	1679	Right-handed alpha
Helix 68	AH5	L	1684	1699	Right-handed alpha
Helix 69	AH6	L	1700	1705	Right-handed 310
Helix 70	AH7	L	1733	1737	Right-handed 310
Helix 71	AH8	L	1739	1751	Right-handed alpha
Helix 72	AH9	L	1751	1759	Right-handed alpha
Helix 73	AI1	L	1760	1763	Right-handed 310
Helix 74	AI2	L	1766	1770	Right-handed 310
Helix 75	AI3	L	1777	1790	Right-handed alpha
Helix 76	AI4	L	1812	1816	Right-handed alpha
Helix 77	AI5	L	1833	1852	Right-handed alpha
Helix 78	AI6	L	1857	1863	Right-handed alpha
Helix 79	AI7	L	1882	1884	Right-handed 310
Helix 80	AI8	L	1885	1890	Right-handed alpha
Helix 81	AI9	L	1892	1896	Right-handed 310
Helix 82	AJ1	L	1923	1929	Right-handed alpha
Helix 83	AJ2	L	1939	1949	Right-handed alpha
Helix 84	AJ3	L	2006	2008	Right-handed 310
Helix 85	AJ4	L	2009	2020	Right-handed alpha
Helix 86	AJ5	L	2035	2040	Right-handed 310
Helix 87	AJ6	L	2057	2062	Right-handed 310
Helix 88	AJ7	L	2102	2117	Right-handed alpha
Helix 89	AJ8	L	2118	2135	Right-handed alpha
Helix 90	AJ9	L	2143	2152	Right-handed alpha
Helix 91	AK1	L	2155	2168	Right-handed alpha

There are 17 sheets in PDB entry 7OJN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	61	62	first strand
Strand 2	L	90	94	anti-parallel
Strand 3	L	97	105	anti-parallel
Strand 4	L	136	144	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	207	208	first strand
Strand 2	L	1106	1108	parallel
Strand 3	L	1111	1112	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	258	260	first strand
Strand 2	L	651	653	anti-parallel
Strand 3	L	1375	1377	anti-parallel
Strand 4	L	1186	1189	anti-parallel
Strand 5	L	1333	1337	anti-parallel
Strand 6	L	1324	1328	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	370	371	first strand
Strand 2	L	374	376	anti-parallel
Strand 3	L	381	384	anti-parallel
Strand 4	L	533	539	anti-parallel
Strand 5	L	546	550	anti-parallel
Strand 6	L	558	564	anti-parallel
Strand 7	L	571	575	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	468	470	first strand
Strand 2	L	528	530	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	738	739	first strand
Strand 2	L	1285	1287	anti-parallel
Strand 3	L	1238	1240	anti-parallel
Strand 4	L	1118	1123	parallel
Strand 5	L	1132	1136	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	826	830	first strand
Strand 2	L	1070	1074	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1380	1382	first strand
Strand 2	L	1387	1389	anti-parallel
Strand 3	L	1392	1393	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1653	1656	first strand
Strand 2	L	1662	1665	anti-parallel
Strand 3	L	1545	1548	anti-parallel
Strand 4	L	1681	1683	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1629	1630	first strand
Strand 2	L	1636	1637	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1706	1709	first strand
Strand 2	L	1819	1822	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1723	1726	first strand
Strand 2	L	1808	1811	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1854	1855	first strand
Strand 2	L	2081	2082	anti-parallel
Strand 3	L	2086	2089	anti-parallel
Strand 4	L	2092	2096	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1911	1917	first strand
Strand 2	L	1955	1967	anti-parallel
Strand 3	L	1974	1986	anti-parallel
Strand 4	L	1992	2002	anti-parallel
Strand 5	L	2054	2055	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1911	1917	first strand
Strand 2	L	1955	1967	anti-parallel
Strand 3	L	1974	1986	anti-parallel
Strand 4	L	1992	2002	anti-parallel
Strand 5	L	2069	2070	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	2030	2032	first strand
Strand 2	L	2049	2051	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	2171	2172	first strand
Strand 2	L	2177	2181	anti-parallel
Strand 3	L	2186	2190	anti-parallel
Strand 4	L	2201	2205	anti-parallel
Strand 5	L	2196	2198	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OJN

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OJN