Analysis of interatomic Contacts of Structural Units in PDB entry:
7OJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OJR entry

There is 1 chain in PDB entry 7OJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2GLY 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 7OJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 34Right-handed alpha
Helix 2
AA2
A
51 66Right-handed alpha
Helix 3
AA3
A
78 89Right-handed alpha
Helix 4
AA4
A
120 131Right-handed alpha
Helix 5
AA5
A
142 146Right-handed 310
Helix 6
AA6
A
154 164Right-handed alpha
Helix 7
AA7
A
165 167Right-handed 310
Helix 8
AA8
A
184 196Right-handed alpha
Helix 9
AA9
A
221 231Right-handed alpha
Helix 10
AB1
A
257 271Right-handed alpha
Helix 11
AB2
A
275 277Right-handed 310
Helix 12
AB3
A
287 297Right-handed alpha
Helix 13
AB4
A
307 319Right-handed alpha
Helix 14
AB5
A
340 356Right-handed alpha
Helix 15
AB6
A
358 365Right-handed alpha
Helix 16
AB7
A
389 402Right-handed alpha
Helix 17
AB8
A
426 443Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 7OJR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
106 112anti-parallel
Strand 3
A
93 97anti-parallel
Strand 4
A
42 47parallel
Strand 5
A
70 76parallel
Strand 6
A
148 149parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
175 179parallel
Strand 3
A
235 238parallel
Strand 4
A
247 250anti-parallel
Strand 5
A
255 256anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 283first strand
Strand 2
A
300 304parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
331 332anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 377first strand
Strand 2
A
417 423anti-parallel
Strand 3
A
406 411anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il