Analysis of interatomic Contacts of Structural Units in PDB entry:
7OJT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OJT entry

There are 4 chains in PDB entry 7OJT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 50	ARG 298
B	PRO 50	ARG 298
C	PRO 50	ARG 298
D	PRO 50	ARG 298

There are 51 helices in PDB entry 7OJT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	62	Right-handed alpha
Helix 2	AA2	A	64	68	Right-handed 310
Helix 3	AA3	A	69	90	Right-handed alpha
Helix 4	AA4	A	91	93	Right-handed 310
Helix 5	AA5	A	94	102	Right-handed alpha
Helix 6	AA6	A	107	116	Right-handed alpha
Helix 7	AA7	A	129	141	Right-handed alpha
Helix 8	AA8	A	153	166	Right-handed alpha
Helix 9	AA9	A	180	191	Right-handed alpha
Helix 10	AB1	A	221	231	Right-handed alpha
Helix 11	AB2	A	260	279	Right-handed alpha
Helix 12	AB3	A	280	283	Right-handed 310
Helix 13	AB4	A	290	294	Right-handed 310
Helix 14	AB5	B	51	62	Right-handed alpha
Helix 15	AB6	B	64	68	Right-handed 310
Helix 16	AB7	B	69	90	Right-handed alpha
Helix 17	AB8	B	91	93	Right-handed 310
Helix 18	AB9	B	94	102	Right-handed alpha
Helix 19	AC1	B	107	116	Right-handed alpha
Helix 20	AC2	B	129	141	Right-handed alpha
Helix 21	AC3	B	153	168	Right-handed alpha
Helix 22	AC4	B	180	191	Right-handed alpha
Helix 23	AC5	B	221	231	Right-handed alpha
Helix 24	AC6	B	260	279	Right-handed alpha
Helix 25	AC7	B	280	283	Right-handed 310
Helix 26	AC8	B	290	294	Right-handed 310
Helix 27	AC9	C	51	62	Right-handed alpha
Helix 28	AD1	C	64	68	Right-handed 310
Helix 29	AD2	C	69	90	Right-handed alpha
Helix 30	AD3	C	91	93	Right-handed 310
Helix 31	AD4	C	94	102	Right-handed alpha
Helix 32	AD5	C	106	116	Right-handed alpha
Helix 33	AD6	C	129	141	Right-handed alpha
Helix 34	AD7	C	153	168	Right-handed alpha
Helix 35	AD8	C	180	191	Right-handed alpha
Helix 36	AD9	C	221	231	Right-handed alpha
Helix 37	AE1	C	260	279	Right-handed alpha
Helix 38	AE2	C	280	283	Right-handed 310
Helix 39	AE3	D	51	62	Right-handed alpha
Helix 40	AE4	D	64	68	Right-handed 310
Helix 41	AE5	D	69	90	Right-handed alpha
Helix 42	AE6	D	91	93	Right-handed 310
Helix 43	AE7	D	94	102	Right-handed alpha
Helix 44	AE8	D	106	116	Right-handed alpha
Helix 45	AE9	D	129	141	Right-handed alpha
Helix 46	AF1	D	153	168	Right-handed alpha
Helix 47	AF2	D	180	191	Right-handed alpha
Helix 48	AF3	D	221	231	Right-handed alpha
Helix 49	AF4	D	260	279	Right-handed alpha
Helix 50	AF5	D	280	283	Right-handed 310
Helix 51	AF6	D	290	294	Right-handed 310

There are 12 sheets in PDB entry 7OJT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	198	first strand
Strand 2	A	120	124	parallel
Strand 3	A	233	242	parallel
Strand 4	A	245	250	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	148	first strand
Strand 2	A	170	173	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	212	first strand
Strand 2	A	215	219	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	198	first strand
Strand 2	B	120	124	parallel
Strand 3	B	233	240	parallel
Strand 4	B	247	250	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	148	first strand
Strand 2	B	170	173	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	212	first strand
Strand 2	B	215	219	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	198	first strand
Strand 2	C	120	124	parallel
Strand 3	C	233	242	parallel
Strand 4	C	245	250	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	148	first strand
Strand 2	C	170	173	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	212	first strand
Strand 2	C	215	219	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	198	first strand
Strand 2	D	120	124	parallel
Strand 3	D	233	240	parallel
Strand 4	D	247	250	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	148	first strand
Strand 2	D	170	173	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	212	first strand
Strand 2	D	215	219	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OJT

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OJT