Analysis of interatomic Contacts of Structural Units in PDB entry:
7OJX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OJX entry

There are 5 chains in PDB entry 7OJX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 392GLU 459
B
 MET 1ASN 200
C
 MET 1GLY 76
D
 MET 1GLY 76
E
 MET 1ARG 72
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7OJX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
437 447Right-handed alpha
Helix 2
AA2
B
4 17Right-handed alpha
Helix 3
AA3
B
93 97Right-handed 310
Helix 4
AA4
B
105 118Right-handed alpha
Helix 5
AA5
B
127 137Right-handed alpha
Helix 6
AA6
B
137 154Right-handed alpha
Helix 7
AA7
B
159 172Right-handed alpha
Helix 8
AA8
B
175 186Right-handed alpha
Helix 9
AA9
B
189 199Right-handed alpha
Helix 10
AB1
C
22 35Right-handed alpha
Helix 11
AB2
C
37 39Right-handed 310
Helix 12
AB3
D
22 35Right-handed alpha
Helix 13
AB4
D
37 39Right-handed 310
Helix 14
AB5
D
56 60Right-handed 310
Helix 15
AB6
E
22 35Right-handed alpha
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There are 6 sheets in PDB entry 7OJX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 400first strand
Strand 2
A
425 428anti-parallel
Strand 3
A
434 436anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 413first strand
Strand 2
A
418 419anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 31first strand
Strand 2
B
38 44anti-parallel
Strand 3
B
55 61anti-parallel
Strand 4
B
72 75anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
2 6anti-parallel
Strand 3
C
66 71parallel
Strand 4
C
41 45anti-parallel
Strand 5
C
48 49anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
2 7anti-parallel
Strand 3
D
66 71parallel
Strand 4
D
41 45anti-parallel
Strand 5
D
48 49anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 16first strand
Strand 2
E
2 6anti-parallel
Strand 3
E
66 71parallel
Strand 4
E
41 45anti-parallel
Strand 5
E
48 49anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il